(38 nodes) Root hair tip network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4EQX5_BRARP	Uncharacterized protein. (93 aa)
	M4EPX0_BRARP	CRAL-TRIO domain-containing protein. (599 aa)
	M4ENC5_BRARP	CRAL-TRIO domain-containing protein. (283 aa)
	M4ENC4_BRARP	CRAL-TRIO domain-containing protein. (488 aa)
	M4EN59_BRARP	Fmp27_GFWDK domain-containing protein. (2519 aa)
	M4EM21_BRARP	Uncharacterized protein. (101 aa)
	M4ELG7_BRARP	CRAL_TRIO_N domain-containing protein. (247 aa)
	M4EJH8_BRARP	CRAL-TRIO domain-containing protein. (696 aa)
	M4EBS0_BRARP	Uncharacterized protein. (532 aa)
	M4EAE6_BRARP	CRAL-TRIO domain-containing protein. (610 aa)
	M4E832_BRARP	CRAL-TRIO domain-containing protein. (402 aa)
	M4E2W7_BRARP	Uncharacterized protein. (491 aa)
	M4DUB2_BRARP	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1527 aa)
	M4DMD0_BRARP	CRAL-TRIO domain-containing protein. (456 aa)
	M4DI13_BRARP	Protein kinase domain-containing protein. (813 aa)
	M4DF17_BRARP	CRAL-TRIO domain-containing protein. (535 aa)
	M4D6S6_BRARP	Uncharacterized protein. (136 aa)
	M4D5R1_BRARP	Uncharacterized protein. (223 aa)
	M4D5C6_BRARP	Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue; Belongs to the peroxidase family. (723 aa)
	M4D4Y7_BRARP	CRAL-TRIO domain-containing protein. (495 aa)
	M4C9J0_BRARP	Uncharacterized protein. (3575 aa)
	M4CDM3_BRARP	Dilute domain-containing protein. (436 aa)
	M4CF59_BRARP	CRAL-TRIO domain-containing protein. (523 aa)
	M4CHS4_BRARP	CRAL-TRIO domain-containing protein. (632 aa)
	M4CQS0_BRARP	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1537 aa)
	M4CUT2_BRARP	Protein kinase domain-containing protein. (896 aa)
	M4D2J9_BRARP	CRAL-TRIO domain-containing protein. (537 aa)
	M4D2K0_BRARP	CRAL-TRIO domain-containing protein. (618 aa)
	M4FEQ6_BRARP	Uncharacterized protein. (265 aa)
	M4FCM2_BRARP	Uncharacterized protein. (73 aa)
	M4FA98_BRARP	Uncharacterized protein. (1058 aa)
	M4F6Q4_BRARP	Annexin. (317 aa)
	M4F0P3_BRARP	CRAL-TRIO domain-containing protein. (544 aa)
	M4F009_BRARP	Annexin. (325 aa)
	M4EXR4_BRARP	Uncharacterized protein. (166 aa)
	M4EX35_BRARP	Uncharacterized protein. (3552 aa)
	M4EQX7_BRARP	Uncharacterized protein. (58 aa)
	M4EQX3_BRARP	CRAL-TRIO domain-containing protein. (632 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C9J0_BRARP	M4EN59_BRARP	M4C9J0	M4EN59	Uncharacterized protein.	Fmp27_GFWDK domain-containing protein.	0.579
M4D6S6_BRARP	M4EQX5_BRARP	M4D6S6	M4EQX5	Uncharacterized protein.	Uncharacterized protein.	0.523
M4D6S6_BRARP	M4EXR4_BRARP	M4D6S6	M4EXR4	Uncharacterized protein.	Uncharacterized protein.	0.518
M4E2W7_BRARP	M4EPX0_BRARP	M4E2W7	M4EPX0	Uncharacterized protein.	CRAL-TRIO domain-containing protein.	0.410
M4EBS0_BRARP	M4EPX0_BRARP	M4EBS0	M4EPX0	Uncharacterized protein.	CRAL-TRIO domain-containing protein.	0.410
M4EN59_BRARP	M4C9J0_BRARP	M4EN59	M4C9J0	Fmp27_GFWDK domain-containing protein.	Uncharacterized protein.	0.579
M4EN59_BRARP	M4EX35_BRARP	M4EN59	M4EX35	Fmp27_GFWDK domain-containing protein.	Uncharacterized protein.	0.579
M4EPX0_BRARP	M4E2W7_BRARP	M4EPX0	M4E2W7	CRAL-TRIO domain-containing protein.	Uncharacterized protein.	0.410
M4EPX0_BRARP	M4EBS0_BRARP	M4EPX0	M4EBS0	CRAL-TRIO domain-containing protein.	Uncharacterized protein.	0.410
M4EPX0_BRARP	M4FCM2_BRARP	M4EPX0	M4FCM2	CRAL-TRIO domain-containing protein.	Uncharacterized protein.	0.410
M4EQX5_BRARP	M4D6S6_BRARP	M4EQX5	M4D6S6	Uncharacterized protein.	Uncharacterized protein.	0.523
M4EX35_BRARP	M4EN59_BRARP	M4EX35	M4EN59	Uncharacterized protein.	Fmp27_GFWDK domain-containing protein.	0.579
M4EXR4_BRARP	M4D6S6_BRARP	M4EXR4	M4D6S6	Uncharacterized protein.	Uncharacterized protein.	0.518
M4FCM2_BRARP	M4EPX0_BRARP	M4FCM2	M4EPX0	Uncharacterized protein.	CRAL-TRIO domain-containing protein.	0.410

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