43 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4F4I2_BRARP	Uncharacterized protein; Belongs to the actin family. (565 aa)
	M4CQY0_BRARP	RuvB-like helicase; Belongs to the RuvB family. (458 aa)
	M4CJT7_BRARP	SANT domain-containing protein. (432 aa)
	M4D400_BRARP	Uncharacterized protein. (207 aa)
	M4D7Y9_BRARP	Uncharacterized protein. (109 aa)
	M4D8P2_BRARP	Uncharacterized protein. (72 aa)
	M4CSX6_BRARP	Uncharacterized protein. (1496 aa)
	M4D9Z6_BRARP	Uncharacterized protein. (101 aa)
	M4DDR4_BRARP	Uncharacterized protein. (1514 aa)
	M4DUJ2_BRARP	RuvB-like helicase; Belongs to the RuvB family. (458 aa)
	M4DV61_BRARP	Uncharacterized protein. (204 aa)
	M4CRF2_BRARP	Uncharacterized protein. (164 aa)
	M4FJ78_BRARP	Uncharacterized protein. (131 aa)
	M4FIA9_BRARP	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (932 aa)
	M4FHE0_BRARP	Uncharacterized protein. (2143 aa)
	M4FGQ6_BRARP	PAPA-1 domain-containing protein. (368 aa)
	M4FDE6_BRARP	Uncharacterized protein. (2036 aa)
	M4FCT4_BRARP	Uncharacterized protein. (104 aa)
	M4FB45_BRARP	Macro domain-containing protein. (566 aa)
	M4FB07_BRARP	Uncharacterized protein. (1083 aa)
	M4FAP6_BRARP	PAPA-1 domain-containing protein. (405 aa)
	M4F9S1_BRARP	RuvB-like helicase. (93 aa)
	M4F113_BRARP	Uncharacterized protein; Belongs to the actin family. (412 aa)
	M4F0Y2_BRARP	Uncharacterized protein. (2019 aa)
	M4EYF5_BRARP	Uncharacterized protein. (430 aa)
	M4EVK3_BRARP	Uncharacterized protein. (130 aa)
	M4ERA4_BRARP	Uncharacterized protein. (65 aa)
	M4EPU7_BRARP	Uncharacterized protein; Belongs to the actin family. (222 aa)
	M4DXZ5_BRARP	SANT domain-containing protein. (406 aa)
	M4E396_BRARP	Uncharacterized protein. (411 aa)
	M4E5K4_BRARP	Uncharacterized protein. (203 aa)
	M4E6M9_BRARP	RuvB-like helicase; Belongs to the RuvB family. (466 aa)
	M4E8G3_BRARP	Uncharacterized protein. (261 aa)
	M4EPN4_BRARP	Uncharacterized protein. (902 aa)
	M4C8C0_BRARP	PAPA-1 domain-containing protein. (452 aa)
	M4CAI2_BRARP	PAPA-1 domain-containing protein. (348 aa)
	M4CDX5_BRARP	RuvB-like helicase; Belongs to the RuvB family. (458 aa)
	M4CEL8_BRARP	HIT-type domain-containing protein. (171 aa)
	M4CEQ4_BRARP	Uncharacterized protein. (194 aa)
	M4CFS4_BRARP	Uncharacterized protein. (723 aa)
	M4CIT9_BRARP	Ubiquitin carboxyl-terminal hydrolase. (329 aa)
	M4CJS9_BRARP	PAPA-1 domain-containing protein. (468 aa)
	M4CRC5_BRARP	HIT-type domain-containing protein. (171 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C8C0_BRARP	M4CAI2_BRARP	M4C8C0	M4CAI2	PAPA-1 domain-containing protein.	PAPA-1 domain-containing protein.	0.571
M4C8C0_BRARP	M4CDX5_BRARP	M4C8C0	M4CDX5	PAPA-1 domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.834
M4C8C0_BRARP	M4CEL8_BRARP	M4C8C0	M4CEL8	PAPA-1 domain-containing protein.	HIT-type domain-containing protein.	0.733
M4C8C0_BRARP	M4CFS4_BRARP	M4C8C0	M4CFS4	PAPA-1 domain-containing protein.	Uncharacterized protein.	0.440
M4C8C0_BRARP	M4CJS9_BRARP	M4C8C0	M4CJS9	PAPA-1 domain-containing protein.	PAPA-1 domain-containing protein.	0.549
M4C8C0_BRARP	M4CJT7_BRARP	M4C8C0	M4CJT7	PAPA-1 domain-containing protein.	SANT domain-containing protein.	0.965
M4C8C0_BRARP	M4CQY0_BRARP	M4C8C0	M4CQY0	PAPA-1 domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.834
M4C8C0_BRARP	M4CRC5_BRARP	M4C8C0	M4CRC5	PAPA-1 domain-containing protein.	HIT-type domain-containing protein.	0.733
M4C8C0_BRARP	M4CSX6_BRARP	M4C8C0	M4CSX6	PAPA-1 domain-containing protein.	Uncharacterized protein.	0.687
M4C8C0_BRARP	M4DDR4_BRARP	M4C8C0	M4DDR4	PAPA-1 domain-containing protein.	Uncharacterized protein.	0.687
M4C8C0_BRARP	M4DUJ2_BRARP	M4C8C0	M4DUJ2	PAPA-1 domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.834
M4C8C0_BRARP	M4DXZ5_BRARP	M4C8C0	M4DXZ5	PAPA-1 domain-containing protein.	SANT domain-containing protein.	0.965
M4C8C0_BRARP	M4E6M9_BRARP	M4C8C0	M4E6M9	PAPA-1 domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.909
M4C8C0_BRARP	M4E8G3_BRARP	M4C8C0	M4E8G3	PAPA-1 domain-containing protein.	Uncharacterized protein.	0.665
M4C8C0_BRARP	M4EPU7_BRARP	M4C8C0	M4EPU7	PAPA-1 domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.648
M4C8C0_BRARP	M4ERA4_BRARP	M4C8C0	M4ERA4	PAPA-1 domain-containing protein.	Uncharacterized protein.	0.445
M4C8C0_BRARP	M4EVK3_BRARP	M4C8C0	M4EVK3	PAPA-1 domain-containing protein.	Uncharacterized protein.	0.733
M4C8C0_BRARP	M4F0Y2_BRARP	M4C8C0	M4F0Y2	PAPA-1 domain-containing protein.	Uncharacterized protein.	0.956
M4C8C0_BRARP	M4F113_BRARP	M4C8C0	M4F113	PAPA-1 domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.540
M4C8C0_BRARP	M4F4I2_BRARP	M4C8C0	M4F4I2	PAPA-1 domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.644

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