(19 nodes) FYVE zinc finger network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4DI87_BRARP	Uncharacterized protein. (1050 aa)
	M4DEK9_BRARP	Uncharacterized protein. (1270 aa)
	M4DGT2_BRARP	Uncharacterized protein. (1074 aa)
	M4FAR6_BRARP	Uncharacterized protein. (1002 aa)
	M4EU55_BRARP	FYVE-type domain-containing protein. (601 aa)
	M4ERI0_BRARP	FYVE-type domain-containing protein. (114 aa)
	M4E4N7_BRARP	Uncharacterized protein. (1066 aa)
	M4E3M1_BRARP	Uncharacterized protein. (1112 aa)
	M4DYE9_BRARP	Uncharacterized protein. (1774 aa)
	M4DSL8_BRARP	FYVE-type domain-containing protein. (957 aa)
	M4CBG5_BRARP	Uncharacterized protein. (1767 aa)
	M4CDF4_BRARP	Uncharacterized protein. (1114 aa)
	M4CHL5_BRARP	Uncharacterized protein. (1077 aa)
	M4CQL5_BRARP	Uncharacterized protein. (1103 aa)
	M4CUI1_BRARP	Uncharacterized protein. (1158 aa)
	M4CXE8_BRARP	Uncharacterized protein. (1064 aa)
	M4D4M5_BRARP	Uncharacterized protein. (1719 aa)
	M4DSF2_BRARP	FYVE-type domain-containing protein. (640 aa)
	M4DIZ9_BRARP	FYVE-type domain-containing protein. (553 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CDF4_BRARP	M4DSF2_BRARP	M4CDF4	M4DSF2	Uncharacterized protein.	FYVE-type domain-containing protein.	0.560
M4CDF4_BRARP	M4EU55_BRARP	M4CDF4	M4EU55	Uncharacterized protein.	FYVE-type domain-containing protein.	0.560
M4CHL5_BRARP	M4DSF2_BRARP	M4CHL5	M4DSF2	Uncharacterized protein.	FYVE-type domain-containing protein.	0.497
M4CHL5_BRARP	M4ERI0_BRARP	M4CHL5	M4ERI0	Uncharacterized protein.	FYVE-type domain-containing protein.	0.455
M4CHL5_BRARP	M4EU55_BRARP	M4CHL5	M4EU55	Uncharacterized protein.	FYVE-type domain-containing protein.	0.497
M4CQL5_BRARP	M4DSF2_BRARP	M4CQL5	M4DSF2	Uncharacterized protein.	FYVE-type domain-containing protein.	0.560
M4CQL5_BRARP	M4EU55_BRARP	M4CQL5	M4EU55	Uncharacterized protein.	FYVE-type domain-containing protein.	0.560
M4CXE8_BRARP	M4DSF2_BRARP	M4CXE8	M4DSF2	Uncharacterized protein.	FYVE-type domain-containing protein.	0.560
M4CXE8_BRARP	M4EU55_BRARP	M4CXE8	M4EU55	Uncharacterized protein.	FYVE-type domain-containing protein.	0.560
M4D4M5_BRARP	M4DI87_BRARP	M4D4M5	M4DI87	Uncharacterized protein.	Uncharacterized protein.	0.424
M4D4M5_BRARP	M4FAR6_BRARP	M4D4M5	M4FAR6	Uncharacterized protein.	Uncharacterized protein.	0.477
M4DEK9_BRARP	M4DSF2_BRARP	M4DEK9	M4DSF2	Uncharacterized protein.	FYVE-type domain-containing protein.	0.567
M4DEK9_BRARP	M4ERI0_BRARP	M4DEK9	M4ERI0	Uncharacterized protein.	FYVE-type domain-containing protein.	0.487
M4DEK9_BRARP	M4EU55_BRARP	M4DEK9	M4EU55	Uncharacterized protein.	FYVE-type domain-containing protein.	0.568
M4DGT2_BRARP	M4DSF2_BRARP	M4DGT2	M4DSF2	Uncharacterized protein.	FYVE-type domain-containing protein.	0.497
M4DGT2_BRARP	M4ERI0_BRARP	M4DGT2	M4ERI0	Uncharacterized protein.	FYVE-type domain-containing protein.	0.455
M4DGT2_BRARP	M4EU55_BRARP	M4DGT2	M4EU55	Uncharacterized protein.	FYVE-type domain-containing protein.	0.497
M4DI87_BRARP	M4D4M5_BRARP	M4DI87	M4D4M5	Uncharacterized protein.	Uncharacterized protein.	0.424
M4DI87_BRARP	M4DSF2_BRARP	M4DI87	M4DSF2	Uncharacterized protein.	FYVE-type domain-containing protein.	0.585
M4DI87_BRARP	M4ERI0_BRARP	M4DI87	M4ERI0	Uncharacterized protein.	FYVE-type domain-containing protein.	0.568

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