(21 nodes) Zinc finger, ZZ-type network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4DJF6_BRARP	Uncharacterized protein. (1523 aa)
	M4FHK0_BRARP	Transcriptional adapter. (486 aa)
	M4FE38_BRARP	Uncharacterized protein. (1634 aa)
	M4FDJ6_BRARP	Uncharacterized protein. (4810 aa)
	M4F1Y5_BRARP	Uncharacterized protein. (1688 aa)
	M4EYX1_BRARP	Uncharacterized protein. (990 aa)
	M4ELK5_BRARP	Transcriptional adapter. (549 aa)
	M4ED48_BRARP	Uncharacterized protein. (1841 aa)
	M4EB71_BRARP	Uncharacterized protein. (1478 aa)
	M4DRR9_BRARP	Uncharacterized protein. (690 aa)
	M4DN56_BRARP	Uncharacterized protein. (617 aa)
	M4DIT2_BRARP	Uncharacterized protein. (793 aa)
	M4DF14_BRARP	Uncharacterized protein. (378 aa)
	M4DBG5_BRARP	Uncharacterized protein. (702 aa)
	M4D9T1_BRARP	Uncharacterized protein. (390 aa)
	M4D8B1_BRARP	Transcriptional adapter. (469 aa)
	M4D4X6_BRARP	Uncharacterized protein. (932 aa)
	M4D1Y4_BRARP	ZZ-type domain-containing protein. (682 aa)
	M4CVZ2_BRARP	Uncharacterized protein. (1583 aa)
	M4CIR5_BRARP	Uncharacterized protein. (859 aa)
	M4CBA1_BRARP	Uncharacterized protein. (1603 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4D1Y4_BRARP	M4D9T1_BRARP	M4D1Y4	M4D9T1	ZZ-type domain-containing protein.	Uncharacterized protein.	0.893
M4D1Y4_BRARP	M4DBG5_BRARP	M4D1Y4	M4DBG5	ZZ-type domain-containing protein.	Uncharacterized protein.	0.999
M4D1Y4_BRARP	M4DF14_BRARP	M4D1Y4	M4DF14	ZZ-type domain-containing protein.	Uncharacterized protein.	0.893
M4D1Y4_BRARP	M4DRR9_BRARP	M4D1Y4	M4DRR9	ZZ-type domain-containing protein.	Uncharacterized protein.	0.999
M4D4X6_BRARP	M4DIT2_BRARP	M4D4X6	M4DIT2	Uncharacterized protein.	Uncharacterized protein.	0.545
M4D4X6_BRARP	M4DN56_BRARP	M4D4X6	M4DN56	Uncharacterized protein.	Uncharacterized protein.	0.540
M4D9T1_BRARP	M4D1Y4_BRARP	M4D9T1	M4D1Y4	Uncharacterized protein.	ZZ-type domain-containing protein.	0.893
M4D9T1_BRARP	M4DBG5_BRARP	M4D9T1	M4DBG5	Uncharacterized protein.	Uncharacterized protein.	0.893
M4D9T1_BRARP	M4DRR9_BRARP	M4D9T1	M4DRR9	Uncharacterized protein.	Uncharacterized protein.	0.893
M4DBG5_BRARP	M4D1Y4_BRARP	M4DBG5	M4D1Y4	Uncharacterized protein.	ZZ-type domain-containing protein.	0.999
M4DBG5_BRARP	M4D9T1_BRARP	M4DBG5	M4D9T1	Uncharacterized protein.	Uncharacterized protein.	0.893
M4DBG5_BRARP	M4DF14_BRARP	M4DBG5	M4DF14	Uncharacterized protein.	Uncharacterized protein.	0.893
M4DBG5_BRARP	M4DRR9_BRARP	M4DBG5	M4DRR9	Uncharacterized protein.	Uncharacterized protein.	0.999
M4DF14_BRARP	M4D1Y4_BRARP	M4DF14	M4D1Y4	Uncharacterized protein.	ZZ-type domain-containing protein.	0.893
M4DF14_BRARP	M4DBG5_BRARP	M4DF14	M4DBG5	Uncharacterized protein.	Uncharacterized protein.	0.893
M4DF14_BRARP	M4DRR9_BRARP	M4DF14	M4DRR9	Uncharacterized protein.	Uncharacterized protein.	0.893
M4DIT2_BRARP	M4D4X6_BRARP	M4DIT2	M4D4X6	Uncharacterized protein.	Uncharacterized protein.	0.545
M4DN56_BRARP	M4D4X6_BRARP	M4DN56	M4D4X6	Uncharacterized protein.	Uncharacterized protein.	0.540
M4DRR9_BRARP	M4D1Y4_BRARP	M4DRR9	M4D1Y4	Uncharacterized protein.	ZZ-type domain-containing protein.	0.999
M4DRR9_BRARP	M4D9T1_BRARP	M4DRR9	M4D9T1	Uncharacterized protein.	Uncharacterized protein.	0.893

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