STRINGSTRING
M4CHX7_BRARP M4CHX7_BRARP M4CLZ5_BRARP M4CLZ5_BRARP M4CN17_BRARP M4CN17_BRARP M4CNU4_BRARP M4CNU4_BRARP M4CV96_BRARP M4CV96_BRARP M4D919_BRARP M4D919_BRARP M4DQM1_BRARP M4DQM1_BRARP M4E2T7_BRARP M4E2T7_BRARP M4EIX5_BRARP M4EIX5_BRARP M4EKL2_BRARP M4EKL2_BRARP M4ETJ8_BRARP M4ETJ8_BRARP M4ETR1_BRARP M4ETR1_BRARP M4EZE4_BRARP M4EZE4_BRARP M4F4D8_BRARP M4F4D8_BRARP M4F683_BRARP M4F683_BRARP M4FD26_BRARP M4FD26_BRARP M4FE91_BRARP M4FE91_BRARP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
M4CHX7_BRARPC2H2-type domain-containing protein. (443 aa)
M4CLZ5_BRARPC2H2-type domain-containing protein. (118 aa)
M4CN17_BRARPMatrin-type domain-containing protein. (276 aa)
M4CNU4_BRARPMatrin-type domain-containing protein. (512 aa)
M4CV96_BRARPUncharacterized protein. (661 aa)
M4D919_BRARPC2H2-type domain-containing protein. (735 aa)
M4DQM1_BRARPMatrin-type domain-containing protein. (246 aa)
M4E2T7_BRARPC2H2-type domain-containing protein. (118 aa)
M4EIX5_BRARPMatrin-type domain-containing protein. (506 aa)
M4EKL2_BRARPUncharacterized protein. (630 aa)
M4ETJ8_BRARPUncharacterized protein. (365 aa)
M4ETR1_BRARPU1-type domain-containing protein. (365 aa)
M4EZE4_BRARPU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (187 aa)
M4F4D8_BRARPANK_REP_REGION domain-containing protein. (830 aa)
M4F683_BRARPC3H1-type domain-containing protein. (121 aa)
M4FD26_BRARPU1-type domain-containing protein. (271 aa)
M4FE91_BRARPU1-type domain-containing protein. (959 aa)
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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