(26 nodes) Snf7 family network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CYX5_BRARP	Uncharacterized protein. (240 aa)
	M4FD53_BRARP	Uncharacterized protein. (215 aa)
	M4F6J0_BRARP	Uncharacterized protein. (212 aa)
	M4EY61_BRARP	Uncharacterized protein. (207 aa)
	M4EFJ7_BRARP	Uncharacterized protein. (224 aa)
	M4E6G7_BRARP	Uncharacterized protein. (99 aa)
	M4E640_BRARP	Uncharacterized protein. (219 aa)
	M4E5V6_BRARP	Uncharacterized protein. (213 aa)
	M4DZV9_BRARP	Uncharacterized protein. (85 aa)
	M4DWN1_BRARP	Uncharacterized protein. (223 aa)
	M4DUN3_BRARP	Uncharacterized protein. (230 aa)
	M4DHP5_BRARP	Uncharacterized protein. (203 aa)
	M4DFK7_BRARP	Uncharacterized protein. (211 aa)
	M4CAZ2_BRARP	Uncharacterized protein. (234 aa)
	M4CE12_BRARP	Uncharacterized protein. (229 aa)
	M4CE15_BRARP	Uncharacterized protein. (94 aa)
	M4CI26_BRARP	Uncharacterized protein. (203 aa)
	M4CNN5_BRARP	Uncharacterized protein. (238 aa)
	M4CR04_BRARP	Uncharacterized protein. (229 aa)
	M4CTW5_BRARP	Uncharacterized protein. (423 aa)
	M4CV22_BRARP	Uncharacterized protein. (174 aa)
	M4CYS6_BRARP	Uncharacterized protein. (218 aa)
	M4D3N1_BRARP	Uncharacterized protein. (212 aa)
	M4D9K3_BRARP	Uncharacterized protein. (225 aa)
	M4DAE9_BRARP	Uncharacterized protein. (197 aa)
	M4DEY3_BRARP	Uncharacterized protein. (156 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CAZ2_BRARP	M4CE12_BRARP	M4CAZ2	M4CE12	Uncharacterized protein.	Uncharacterized protein.	0.772
M4CAZ2_BRARP	M4CE15_BRARP	M4CAZ2	M4CE15	Uncharacterized protein.	Uncharacterized protein.	0.772
M4CAZ2_BRARP	M4CI26_BRARP	M4CAZ2	M4CI26	Uncharacterized protein.	Uncharacterized protein.	0.870
M4CAZ2_BRARP	M4CNN5_BRARP	M4CAZ2	M4CNN5	Uncharacterized protein.	Uncharacterized protein.	0.901
M4CAZ2_BRARP	M4CR04_BRARP	M4CAZ2	M4CR04	Uncharacterized protein.	Uncharacterized protein.	0.772
M4CAZ2_BRARP	M4CTW5_BRARP	M4CAZ2	M4CTW5	Uncharacterized protein.	Uncharacterized protein.	0.797
M4CAZ2_BRARP	M4CV22_BRARP	M4CAZ2	M4CV22	Uncharacterized protein.	Uncharacterized protein.	0.870
M4CAZ2_BRARP	M4CYS6_BRARP	M4CAZ2	M4CYS6	Uncharacterized protein.	Uncharacterized protein.	0.777
M4CAZ2_BRARP	M4CYX5_BRARP	M4CAZ2	M4CYX5	Uncharacterized protein.	Uncharacterized protein.	0.901
M4CAZ2_BRARP	M4D3N1_BRARP	M4CAZ2	M4D3N1	Uncharacterized protein.	Uncharacterized protein.	0.882
M4CAZ2_BRARP	M4D9K3_BRARP	M4CAZ2	M4D9K3	Uncharacterized protein.	Uncharacterized protein.	0.906
M4CAZ2_BRARP	M4DAE9_BRARP	M4CAZ2	M4DAE9	Uncharacterized protein.	Uncharacterized protein.	0.841
M4CAZ2_BRARP	M4DEY3_BRARP	M4CAZ2	M4DEY3	Uncharacterized protein.	Uncharacterized protein.	0.882
M4CAZ2_BRARP	M4DFK7_BRARP	M4CAZ2	M4DFK7	Uncharacterized protein.	Uncharacterized protein.	0.836
M4CAZ2_BRARP	M4DHP5_BRARP	M4CAZ2	M4DHP5	Uncharacterized protein.	Uncharacterized protein.	0.870
M4CAZ2_BRARP	M4DUN3_BRARP	M4CAZ2	M4DUN3	Uncharacterized protein.	Uncharacterized protein.	0.772
M4CAZ2_BRARP	M4DWN1_BRARP	M4CAZ2	M4DWN1	Uncharacterized protein.	Uncharacterized protein.	0.841
M4CAZ2_BRARP	M4E5V6_BRARP	M4CAZ2	M4E5V6	Uncharacterized protein.	Uncharacterized protein.	0.882
M4CAZ2_BRARP	M4E640_BRARP	M4CAZ2	M4E640	Uncharacterized protein.	Uncharacterized protein.	0.779
M4CAZ2_BRARP	M4E6G7_BRARP	M4CAZ2	M4E6G7	Uncharacterized protein.	Uncharacterized protein.	0.779

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