90 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4F3Z5_BRARP	PHD-type domain-containing protein. (703 aa)
	M4DTW5_BRARP	Uncharacterized protein. (1157 aa)
	M4DUB4_BRARP	PHD-type domain-containing protein. (254 aa)
	M4DUM0_BRARP	Uncharacterized protein. (1565 aa)
	M4DUQ6_BRARP	Uncharacterized protein. (845 aa)
	M4DVJ9_BRARP	PHD-type domain-containing protein. (254 aa)
	M4DVV9_BRARP	PHD-type domain-containing protein. (593 aa)
	M4DWG2_BRARP	Uncharacterized protein. (285 aa)
	M4DYH9_BRARP	Uncharacterized protein. (224 aa)
	M4DYX4_BRARP	Uncharacterized protein. (962 aa)
	M4E0Y2_BRARP	Uncharacterized protein. (737 aa)
	M4E3M3_BRARP	Uncharacterized protein. (1537 aa)
	M4E419_BRARP	Sister chromatid cohesion protein. (1841 aa)
	M4E7R1_BRARP	PHD-type domain-containing protein. (246 aa)
	M4E7V1_BRARP	PHD domain-containing protein. (706 aa)
	M4EB71_BRARP	Uncharacterized protein. (1478 aa)
	M4EBQ1_BRARP	PHD-type domain-containing protein. (250 aa)
	M4ECX2_BRARP	PHD domain-containing protein. (451 aa)
	M4ED48_BRARP	Uncharacterized protein. (1841 aa)
	M4EDG5_BRARP	PHD-type domain-containing protein. (244 aa)
	M4EES8_BRARP	Uncharacterized protein. (1114 aa)
	M4EEV4_BRARP	Uncharacterized protein. (333 aa)
	M4EFL2_BRARP	Uncharacterized protein. (2222 aa)
	M4EFT1_BRARP	Uncharacterized protein. (1302 aa)
	M4EKT4_BRARP	Uncharacterized protein. (550 aa)
	M4EL04_BRARP	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (813 aa)
	M4ENW1_BRARP	PHD-type domain-containing protein. (594 aa)
	M4ES26_BRARP	PHD domain-containing protein. (192 aa)
	M4EZC6_BRARP	PHD-type domain-containing protein. (250 aa)
	M4EZY8_BRARP	PHD-type domain-containing protein. (1070 aa)
	M4F1B4_BRARP	PHD-type domain-containing protein. (247 aa)
	M4F1K4_BRARP	PHD-type domain-containing protein. (254 aa)
	M4F1Y5_BRARP	Uncharacterized protein. (1688 aa)
	M4F213_BRARP	PHD-type domain-containing protein. (1323 aa)
	M4F2Q1_BRARP	Uncharacterized protein. (1051 aa)
	M4F353_BRARP	PHD domain-containing protein. (399 aa)
	M4DTB4_BRARP	Uncharacterized protein. (287 aa)
	M4F659_BRARP	PHD-type domain-containing protein. (257 aa)
	M4F6L6_BRARP	Uncharacterized protein. (541 aa)
	M4F6X6_BRARP	Uncharacterized protein. (1275 aa)
	M4F888_BRARP	Uncharacterized protein. (1869 aa)
	M4F938_BRARP	Uncharacterized protein. (1536 aa)
	M4FIA9_BRARP	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (932 aa)
	M4FI47_BRARP	PHD finger protein ING. (263 aa)
	M4FHE0_BRARP	Uncharacterized protein. (2143 aa)
	M4FG20_BRARP	Uncharacterized protein. (740 aa)
	M4FF81_BRARP	PHD domain-containing protein. (720 aa)
	M4FE97_BRARP	PHD domain-containing protein. (356 aa)
	M4FDE6_BRARP	Uncharacterized protein. (2036 aa)
	M4FBP9_BRARP	Uncharacterized protein. (662 aa)
	M4FAU8_BRARP	Uncharacterized protein. (709 aa)
	M4F9J5_BRARP	Uncharacterized protein. (576 aa)
	M4C951_BRARP	Uncharacterized protein. (1184 aa)
	M4CAD0_BRARP	Uncharacterized protein. (478 aa)
	M4CB14_BRARP	PHD-type domain-containing protein. (250 aa)
	M4CDM6_BRARP	PHD-type domain-containing protein. (282 aa)
	M4CDX0_BRARP	PHD domain-containing protein. (667 aa)
	M4CE50_BRARP	Uncharacterized protein. (846 aa)
	M4CHK6_BRARP	Uncharacterized protein. (462 aa)
	M4CIP8_BRARP	Uncharacterized protein. (664 aa)
	M4CIR5_BRARP	Uncharacterized protein. (859 aa)
	M4CPL9_BRARP	Uncharacterized protein. (1476 aa)
	M4CQS1_BRARP	PHD-type domain-containing protein. (70 aa)
	M4CQZ4_BRARP	Uncharacterized protein. (1532 aa)
	M4CRQ6_BRARP	Uncharacterized protein. (656 aa)
	M4CUC0_BRARP	Uncharacterized protein. (1365 aa)
	M4CVU0_BRARP	Uncharacterized protein. (1367 aa)
	M4CVZ2_BRARP	Uncharacterized protein. (1583 aa)
	M4CWU6_BRARP	Sister chromatid cohesion protein. (1832 aa)
	M4CXE3_BRARP	Uncharacterized protein. (1727 aa)
	M4CY24_BRARP	PHD-type domain-containing protein. (240 aa)
	M4CZV5_BRARP	Uncharacterized protein. (345 aa)
	M4D089_BRARP	PHD-type domain-containing protein. (261 aa)
	M4D1G0_BRARP	Uncharacterized protein. (834 aa)
	M4D2K5_BRARP	Uncharacterized protein. (336 aa)
	M4D3U9_BRARP	Uncharacterized protein. (841 aa)
	M4D680_BRARP	PHD-type domain-containing protein. (1003 aa)
	M4D8L0_BRARP	Uncharacterized protein. (701 aa)
	M4D8Q8_BRARP	Uncharacterized protein. (1284 aa)
	M4DAT2_BRARP	Uncharacterized protein. (231 aa)
	M4DEU4_BRARP	PHD finger protein ING. (233 aa)
	M4DGN0_BRARP	Uncharacterized protein. (1356 aa)
	M4DGQ7_BRARP	Uncharacterized protein. (495 aa)
	M4DJF6_BRARP	Uncharacterized protein. (1523 aa)
	M4DJM0_BRARP	PHD-type domain-containing protein. (250 aa)
	M4DL00_BRARP	PHD-type domain-containing protein. (802 aa)
	M4DL45_BRARP	PHD-type domain-containing protein. (1042 aa)
	M4DLN4_BRARP	PHD-type domain-containing protein. (244 aa)
	M4DPL7_BRARP	Uncharacterized protein. (1114 aa)
	M4DSA2_BRARP	Uncharacterized protein. (224 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C951_BRARP	M4CPL9_BRARP	M4C951	M4CPL9	Uncharacterized protein.	Uncharacterized protein.	0.447
M4C951_BRARP	M4CXE3_BRARP	M4C951	M4CXE3	Uncharacterized protein.	Uncharacterized protein.	0.410
M4C951_BRARP	M4E3M3_BRARP	M4C951	M4E3M3	Uncharacterized protein.	Uncharacterized protein.	0.442
M4CB14_BRARP	M4DYX4_BRARP	M4CB14	M4DYX4	PHD-type domain-containing protein.	Uncharacterized protein.	0.453
M4CB14_BRARP	M4FIA9_BRARP	M4CB14	M4FIA9	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	0.453
M4CDM6_BRARP	M4CDX0_BRARP	M4CDM6	M4CDX0	PHD-type domain-containing protein.	PHD domain-containing protein.	0.464
M4CDM6_BRARP	M4D2K5_BRARP	M4CDM6	M4D2K5	PHD-type domain-containing protein.	Uncharacterized protein.	0.493
M4CDM6_BRARP	M4DLN4_BRARP	M4CDM6	M4DLN4	PHD-type domain-containing protein.	PHD-type domain-containing protein.	0.509
M4CDM6_BRARP	M4DYX4_BRARP	M4CDM6	M4DYX4	PHD-type domain-containing protein.	Uncharacterized protein.	0.525
M4CDM6_BRARP	M4E7R1_BRARP	M4CDM6	M4E7R1	PHD-type domain-containing protein.	PHD-type domain-containing protein.	0.509
M4CDM6_BRARP	M4FF81_BRARP	M4CDM6	M4FF81	PHD-type domain-containing protein.	PHD domain-containing protein.	0.449
M4CDM6_BRARP	M4FIA9_BRARP	M4CDM6	M4FIA9	PHD-type domain-containing protein.	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	0.453
M4CDX0_BRARP	M4CDM6_BRARP	M4CDX0	M4CDM6	PHD domain-containing protein.	PHD-type domain-containing protein.	0.464
M4CDX0_BRARP	M4D2K5_BRARP	M4CDX0	M4D2K5	PHD domain-containing protein.	Uncharacterized protein.	0.589
M4CDX0_BRARP	M4DAT2_BRARP	M4CDX0	M4DAT2	PHD domain-containing protein.	Uncharacterized protein.	0.411
M4CDX0_BRARP	M4DUB4_BRARP	M4CDX0	M4DUB4	PHD domain-containing protein.	PHD-type domain-containing protein.	0.464
M4CDX0_BRARP	M4DWG2_BRARP	M4CDX0	M4DWG2	PHD domain-containing protein.	Uncharacterized protein.	0.411
M4CDX0_BRARP	M4DYX4_BRARP	M4CDX0	M4DYX4	PHD domain-containing protein.	Uncharacterized protein.	0.429
M4CDX0_BRARP	M4FIA9_BRARP	M4CDX0	M4FIA9	PHD domain-containing protein.	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	0.429
M4CHK6_BRARP	M4CUC0_BRARP	M4CHK6	M4CUC0	Uncharacterized protein.	Uncharacterized protein.	0.431

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