8 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CA69_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	M4CD75_BRARP	Methyltransf_11 domain-containing protein; Belongs to the universal ribosomal protein uS9 family. (383 aa)
	M4CHU3_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (145 aa)
	M4CQG5_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	M4DHA1_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (211 aa)
	M4DNC2_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (406 aa)
	M4FGB7_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	M4FGH9_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (146 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CA69_BRARP	M4CD75_BRARP	M4CA69	M4CD75	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Methyltransf_11 domain-containing protein; Belongs to the universal ribosomal protein uS9 family.	0.544
M4CA69_BRARP	M4CHU3_BRARP	M4CA69	M4CHU3	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.834
M4CA69_BRARP	M4CQG5_BRARP	M4CA69	M4CQG5	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.543
M4CA69_BRARP	M4DHA1_BRARP	M4CA69	M4DHA1	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.834
M4CA69_BRARP	M4DNC2_BRARP	M4CA69	M4DNC2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.834
M4CA69_BRARP	M4FGB7_BRARP	M4CA69	M4FGB7	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.543
M4CA69_BRARP	M4FGH9_BRARP	M4CA69	M4FGH9	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.544
M4CD75_BRARP	M4CA69_BRARP	M4CD75	M4CA69	Methyltransf_11 domain-containing protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.544
M4CD75_BRARP	M4CQG5_BRARP	M4CD75	M4CQG5	Methyltransf_11 domain-containing protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.544
M4CD75_BRARP	M4FGB7_BRARP	M4CD75	M4FGB7	Methyltransf_11 domain-containing protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.543
M4CD75_BRARP	M4FGH9_BRARP	M4CD75	M4FGH9	Methyltransf_11 domain-containing protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.544
M4CHU3_BRARP	M4CA69_BRARP	M4CHU3	M4CA69	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.834
M4CHU3_BRARP	M4CQG5_BRARP	M4CHU3	M4CQG5	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.834
M4CHU3_BRARP	M4DHA1_BRARP	M4CHU3	M4DHA1	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.543
M4CHU3_BRARP	M4DNC2_BRARP	M4CHU3	M4DNC2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.570
M4CHU3_BRARP	M4FGB7_BRARP	M4CHU3	M4FGB7	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.834
M4CHU3_BRARP	M4FGH9_BRARP	M4CHU3	M4FGH9	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.834
M4CQG5_BRARP	M4CA69_BRARP	M4CQG5	M4CA69	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.543
M4CQG5_BRARP	M4CD75_BRARP	M4CQG5	M4CD75	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Methyltransf_11 domain-containing protein; Belongs to the universal ribosomal protein uS9 family.	0.544
M4CQG5_BRARP	M4CHU3_BRARP	M4CQG5	M4CHU3	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.834

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