(33 nodes) HEAT, type 2 network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CWA9_BRARP	Uncharacterized protein. (2613 aa)
	M4C7M3_BRARP	Protein kinase domain-containing protein. (797 aa)
	M4CC48_BRARP	Uncharacterized protein. (476 aa)
	M4CDI2_BRARP	TOG domain-containing protein. (1111 aa)
	M4CM81_BRARP	Uncharacterized protein. (1984 aa)
	M4CQN0_BRARP	TOG domain-containing protein. (1115 aa)
	M4CT42_BRARP	Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family. (271 aa)
	M4D3E2_BRARP	Uncharacterized protein. (588 aa)
	M4D3Q0_BRARP	Uncharacterized protein. (1477 aa)
	M4D7L4_BRARP	Uncharacterized protein. (586 aa)
	M4DDA6_BRARP	TFCD_C domain-containing protein. (1288 aa)
	M4DI13_BRARP	Protein kinase domain-containing protein. (813 aa)
	M4DKE7_BRARP	Protein kinase domain-containing protein. (796 aa)
	M4DLG7_BRARP	Uncharacterized protein. (259 aa)
	M4DLQ5_BRARP	Uncharacterized protein. (734 aa)
	M4DR96_BRARP	Importin N-terminal domain-containing protein. (1049 aa)
	M4DU72_BRARP	TOG domain-containing protein. (1079 aa)
	M4E2L7_BRARP	Uncharacterized protein. (1960 aa)
	M4E453_BRARP	Uncharacterized protein. (1182 aa)
	M4E6Y9_BRARP	Protein kinase domain-containing protein. (910 aa)
	M4E791_BRARP	Uncharacterized protein. (638 aa)
	M4E7I6_BRARP	Uncharacterized protein. (329 aa)
	M4E7V6_BRARP	Uncharacterized protein. (726 aa)
	M4E8Q6_BRARP	BRO1 domain-containing protein. (770 aa)
	M4EC20_BRARP	Importin N-terminal domain-containing protein. (1049 aa)
	M4ECY1_BRARP	Uncharacterized protein. (734 aa)
	M4F1T3_BRARP	Uncharacterized protein. (156 aa)
	M4F3N2_BRARP	Exocyst subunit Exo70 family protein; Component of the exocyst complex. (600 aa)
	M4F407_BRARP	Uncharacterized protein. (464 aa)
	M4F5U6_BRARP	Uncharacterized protein. (1438 aa)
	M4F6I2_BRARP	Uncharacterized protein. (1434 aa)
	M4F9K7_BRARP	TOG domain-containing protein. (1268 aa)
	M4FFW8_BRARP	Uncharacterized protein. (133 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C7M3_BRARP	M4DI13_BRARP	M4C7M3	M4DI13	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.445
M4C7M3_BRARP	M4E6Y9_BRARP	M4C7M3	M4E6Y9	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.445
M4CT42_BRARP	M4CWA9_BRARP	M4CT42	M4CWA9	Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.	Uncharacterized protein.	0.514
M4CWA9_BRARP	M4CT42_BRARP	M4CWA9	M4CT42	Uncharacterized protein.	Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.	0.514
M4D3E2_BRARP	M4D7L4_BRARP	M4D3E2	M4D7L4	Uncharacterized protein.	Uncharacterized protein.	0.543
M4D3E2_BRARP	M4E8Q6_BRARP	M4D3E2	M4E8Q6	Uncharacterized protein.	BRO1 domain-containing protein.	0.593
M4D3Q0_BRARP	M4DLQ5_BRARP	M4D3Q0	M4DLQ5	Uncharacterized protein.	Uncharacterized protein.	0.558
M4D3Q0_BRARP	M4E7V6_BRARP	M4D3Q0	M4E7V6	Uncharacterized protein.	Uncharacterized protein.	0.558
M4D3Q0_BRARP	M4ECY1_BRARP	M4D3Q0	M4ECY1	Uncharacterized protein.	Uncharacterized protein.	0.558
M4D7L4_BRARP	M4D3E2_BRARP	M4D7L4	M4D3E2	Uncharacterized protein.	Uncharacterized protein.	0.543
M4D7L4_BRARP	M4E8Q6_BRARP	M4D7L4	M4E8Q6	Uncharacterized protein.	BRO1 domain-containing protein.	0.593
M4DI13_BRARP	M4C7M3_BRARP	M4DI13	M4C7M3	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.445
M4DI13_BRARP	M4DKE7_BRARP	M4DI13	M4DKE7	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.445
M4DKE7_BRARP	M4DI13_BRARP	M4DKE7	M4DI13	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.445
M4DKE7_BRARP	M4E6Y9_BRARP	M4DKE7	M4E6Y9	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.445
M4DLQ5_BRARP	M4D3Q0_BRARP	M4DLQ5	M4D3Q0	Uncharacterized protein.	Uncharacterized protein.	0.558
M4DLQ5_BRARP	M4E7V6_BRARP	M4DLQ5	M4E7V6	Uncharacterized protein.	Uncharacterized protein.	0.544
M4DLQ5_BRARP	M4ECY1_BRARP	M4DLQ5	M4ECY1	Uncharacterized protein.	Uncharacterized protein.	0.543
M4E453_BRARP	M4F5U6_BRARP	M4E453	M4F5U6	Uncharacterized protein.	Uncharacterized protein.	0.411
M4E453_BRARP	M4F6I2_BRARP	M4E453	M4F6I2	Uncharacterized protein.	Uncharacterized protein.	0.412

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