(20 nodes) Terpene cyclase-like 1, C-terminal domain network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4C8P0_BRARP	Uncharacterized protein. (595 aa)
	M4CBH5_BRARP	Uncharacterized protein. (608 aa)
	M4CBH7_BRARP	Uncharacterized protein. (604 aa)
	M4CD84_BRARP	Uncharacterized protein. (556 aa)
	M4DYG8_BRARP	Uncharacterized protein. (603 aa)
	M4CET2_BRARP	Uncharacterized protein. (589 aa)
	M4D7Q3_BRARP	Uncharacterized protein. (475 aa)
	M4D8Z5_BRARP	Uncharacterized protein. (599 aa)
	M4DWM7_BRARP	Uncharacterized protein. (405 aa)
	M4DX36_BRARP	Uncharacterized protein. (546 aa)
	M4DYH0_BRARP	Uncharacterized protein. (508 aa)
	M4DYG4_BRARP	Uncharacterized protein. (602 aa)
	M4DYG7_BRARP	Uncharacterized protein. (559 aa)
	M4FIJ1_BRARP	Uncharacterized protein. (545 aa)
	M4FHK4_BRARP	Uncharacterized protein. (545 aa)
	M4F223_BRARP	Uncharacterized protein. (780 aa)
	M4EHI6_BRARP	Uncharacterized protein. (557 aa)
	M4EGL7_BRARP	Uncharacterized protein. (601 aa)
	M4E8Q8_BRARP	Uncharacterized protein. (1062 aa)
	M4E8Q7_BRARP	Uncharacterized protein. (560 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C8P0_BRARP	M4E8Q7_BRARP	M4C8P0	M4E8Q7	Uncharacterized protein.	Uncharacterized protein.	0.901
M4CD84_BRARP	M4DYG4_BRARP	M4CD84	M4DYG4	Uncharacterized protein.	Uncharacterized protein.	0.905
M4CD84_BRARP	M4EHI6_BRARP	M4CD84	M4EHI6	Uncharacterized protein.	Uncharacterized protein.	0.901
M4CD84_BRARP	M4FHK4_BRARP	M4CD84	M4FHK4	Uncharacterized protein.	Uncharacterized protein.	0.908
M4CD84_BRARP	M4FIJ1_BRARP	M4CD84	M4FIJ1	Uncharacterized protein.	Uncharacterized protein.	0.909
M4DYG4_BRARP	M4CD84_BRARP	M4DYG4	M4CD84	Uncharacterized protein.	Uncharacterized protein.	0.905
M4DYG4_BRARP	M4EHI6_BRARP	M4DYG4	M4EHI6	Uncharacterized protein.	Uncharacterized protein.	0.904
M4DYG4_BRARP	M4FHK4_BRARP	M4DYG4	M4FHK4	Uncharacterized protein.	Uncharacterized protein.	0.908
M4DYG4_BRARP	M4FIJ1_BRARP	M4DYG4	M4FIJ1	Uncharacterized protein.	Uncharacterized protein.	0.908
M4E8Q7_BRARP	M4C8P0_BRARP	M4E8Q7	M4C8P0	Uncharacterized protein.	Uncharacterized protein.	0.901
M4EHI6_BRARP	M4CD84_BRARP	M4EHI6	M4CD84	Uncharacterized protein.	Uncharacterized protein.	0.901
M4EHI6_BRARP	M4DYG4_BRARP	M4EHI6	M4DYG4	Uncharacterized protein.	Uncharacterized protein.	0.904
M4EHI6_BRARP	M4FHK4_BRARP	M4EHI6	M4FHK4	Uncharacterized protein.	Uncharacterized protein.	0.909
M4EHI6_BRARP	M4FIJ1_BRARP	M4EHI6	M4FIJ1	Uncharacterized protein.	Uncharacterized protein.	0.909
M4FHK4_BRARP	M4CD84_BRARP	M4FHK4	M4CD84	Uncharacterized protein.	Uncharacterized protein.	0.908
M4FHK4_BRARP	M4DYG4_BRARP	M4FHK4	M4DYG4	Uncharacterized protein.	Uncharacterized protein.	0.908
M4FHK4_BRARP	M4EHI6_BRARP	M4FHK4	M4EHI6	Uncharacterized protein.	Uncharacterized protein.	0.909
M4FHK4_BRARP	M4FIJ1_BRARP	M4FHK4	M4FIJ1	Uncharacterized protein.	Uncharacterized protein.	0.900
M4FIJ1_BRARP	M4CD84_BRARP	M4FIJ1	M4CD84	Uncharacterized protein.	Uncharacterized protein.	0.909
M4FIJ1_BRARP	M4DYG4_BRARP	M4FIJ1	M4DYG4	Uncharacterized protein.	Uncharacterized protein.	0.908

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