(13 nodes) NPSN/SNAP25-like, N-terminal SNARE domain network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CBT3_BRARP	t-SNARE coiled-coil homology domain-containing protein. (271 aa)
	M4CMC3_BRARP	t-SNARE coiled-coil homology domain-containing protein. (264 aa)
	M4CP20_BRARP	t-SNARE coiled-coil homology domain-containing protein. (292 aa)
	M4CYL4_BRARP	t-SNARE coiled-coil homology domain-containing protein. (1018 aa)
	M4D918_BRARP	t-SNARE coiled-coil homology domain-containing protein. (305 aa)
	M4D9T6_BRARP	Uncharacterized protein. (304 aa)
	M4DCA5_BRARP	t-SNARE coiled-coil homology domain-containing protein. (153 aa)
	M4DLF0_BRARP	t-SNARE coiled-coil homology domain-containing protein. (262 aa)
	M4DXK2_BRARP	t-SNARE coiled-coil homology domain-containing protein. (271 aa)
	M4E0B9_BRARP	t-SNARE coiled-coil homology domain-containing protein. (271 aa)
	M4E2K2_BRARP	t-SNARE coiled-coil homology domain-containing protein. (262 aa)
	M4EKL1_BRARP	t-SNARE coiled-coil homology domain-containing protein. (294 aa)
	M4EW06_BRARP	NAF domain-containing protein. (383 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CBT3_BRARP	M4CMC3_BRARP	M4CBT3	M4CMC3	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.548
M4CBT3_BRARP	M4CP20_BRARP	M4CBT3	M4CP20	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.418
M4CBT3_BRARP	M4D918_BRARP	M4CBT3	M4D918	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.491
M4CBT3_BRARP	M4D9T6_BRARP	M4CBT3	M4D9T6	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.418
M4CBT3_BRARP	M4DCA5_BRARP	M4CBT3	M4DCA5	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.548
M4CBT3_BRARP	M4DLF0_BRARP	M4CBT3	M4DLF0	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.547
M4CBT3_BRARP	M4DXK2_BRARP	M4CBT3	M4DXK2	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.543
M4CBT3_BRARP	M4E0B9_BRARP	M4CBT3	M4E0B9	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.543
M4CBT3_BRARP	M4E2K2_BRARP	M4CBT3	M4E2K2	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.547
M4CBT3_BRARP	M4EKL1_BRARP	M4CBT3	M4EKL1	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.491
M4CBT3_BRARP	M4EW06_BRARP	M4CBT3	M4EW06	t-SNARE coiled-coil homology domain-containing protein.	NAF domain-containing protein.	0.418
M4CMC3_BRARP	M4CBT3_BRARP	M4CMC3	M4CBT3	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.548
M4CMC3_BRARP	M4CP20_BRARP	M4CMC3	M4CP20	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.490
M4CMC3_BRARP	M4CYL4_BRARP	M4CMC3	M4CYL4	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.429
M4CMC3_BRARP	M4D918_BRARP	M4CMC3	M4D918	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.636
M4CMC3_BRARP	M4D9T6_BRARP	M4CMC3	M4D9T6	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.490
M4CMC3_BRARP	M4DCA5_BRARP	M4CMC3	M4DCA5	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.540
M4CMC3_BRARP	M4DLF0_BRARP	M4CMC3	M4DLF0	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.543
M4CMC3_BRARP	M4DXK2_BRARP	M4CMC3	M4DXK2	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.548
M4CMC3_BRARP	M4E0B9_BRARP	M4CMC3	M4E0B9	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.548

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