(44 nodes) MyD88-independent TLR4 cascade network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4D8B7_BRARP	Uncharacterized protein. (106 aa)
	M4FHM3_BRARP	TYR_PHOSPHATASE_2 domain-containing protein. (199 aa)
	M4ESD4_BRARP	Serine/threonine-protein phosphatase. (306 aa)
	M4EM81_BRARP	Uncharacterized protein. (220 aa)
	M4EL13_BRARP	TYR_PHOSPHATASE_2 domain-containing protein. (193 aa)
	M4EGB9_BRARP	Serine/threonine-protein phosphatase. (306 aa)
	M4EC75_BRARP	TMEM189_B_dmain domain-containing protein. (298 aa)
	M4E8Q6_BRARP	BRO1 domain-containing protein. (770 aa)
	M4E7I6_BRARP	Uncharacterized protein. (329 aa)
	M4E743_BRARP	Ribosomal_S27 domain-containing protein. (210 aa)
	M4E466_BRARP	Uncharacterized protein. (208 aa)
	M4CKH0_BRARP	Serine/threonine-protein phosphatase. (337 aa)
	M4CGK7_BRARP	Serine/threonine-protein phosphatase. (311 aa)
	M4CFB6_BRARP	COR domain-containing protein. (1373 aa)
	M4CA35_BRARP	TYR_PHOSPHATASE_2 domain-containing protein. (201 aa)
	M4C7T4_BRARP	Serine/threonine-protein phosphatase. (329 aa)
	M4DZ72_BRARP	Uncharacterized protein. (245 aa)
	M4DY14_BRARP	TYR_PHOSPHATASE_2 domain-containing protein. (202 aa)
	M4DTU1_BRARP	Serine/threonine-protein phosphatase. (306 aa)
	M4DTT3_BRARP	Uncharacterized protein. (597 aa)
	M4DRD4_BRARP	TMEM189_B_dmain domain-containing protein. (291 aa)
	M4DPJ4_BRARP	Uncharacterized protein. (598 aa)
	M4DLL7_BRARP	SER_THR_PHOSPHATASE domain-containing protein. (132 aa)
	M4DLG7_BRARP	Uncharacterized protein. (259 aa)
	M4E453_BRARP	Uncharacterized protein. (1182 aa)
	M4DK42_BRARP	Serine/threonine-protein phosphatase. (313 aa)
	M4DIL9_BRARP	Ribosomal_S27 domain-containing protein. (84 aa)
	M4DIC0_BRARP	Serine/threonine-protein phosphatase. (306 aa)
	M4DFV6_BRARP	Uncharacterized protein. (215 aa)
	M4DDK1_BRARP	Serine/threonine-protein phosphatase. (313 aa)
	M4F5R9_BRARP	Uncharacterized protein. (146 aa)
	M4F1T3_BRARP	Uncharacterized protein. (156 aa)
	M4F1G5_BRARP	PsaL domain-containing protein. (219 aa)
	M4FFW8_BRARP	Uncharacterized protein. (133 aa)
	M4FE60_BRARP	Uncharacterized protein. (901 aa)
	M4E2Z1_BRARP	Uncharacterized protein. (231 aa)
	M4EV39_BRARP	PsaL domain-containing protein. (219 aa)
	M4CMV2_BRARP	Uncharacterized protein. (251 aa)
	M4CWM3_BRARP	Uncharacterized protein. (207 aa)
	M4CWN8_BRARP	Uncharacterized protein. (325 aa)
	M4D1R6_BRARP	TMEM189_B_dmain domain-containing protein. (295 aa)
	M4D1R7_BRARP	TMEM189_B_dmain domain-containing protein. (285 aa)
	M4D3E2_BRARP	Uncharacterized protein. (588 aa)
	M4D7L4_BRARP	Uncharacterized protein. (586 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C7T4_BRARP	M4CWN8_BRARP	M4C7T4	M4CWN8	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4C7T4_BRARP	M4D3E2_BRARP	M4C7T4	M4D3E2	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4C7T4_BRARP	M4D7L4_BRARP	M4C7T4	M4D7L4	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4C7T4_BRARP	M4DLG7_BRARP	M4C7T4	M4DLG7	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4C7T4_BRARP	M4E453_BRARP	M4C7T4	M4E453	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4C7T4_BRARP	M4E7I6_BRARP	M4C7T4	M4E7I6	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4C7T4_BRARP	M4E8Q6_BRARP	M4C7T4	M4E8Q6	Serine/threonine-protein phosphatase.	BRO1 domain-containing protein.	0.741
M4C7T4_BRARP	M4F1T3_BRARP	M4C7T4	M4F1T3	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4C7T4_BRARP	M4FE60_BRARP	M4C7T4	M4FE60	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4C7T4_BRARP	M4FFW8_BRARP	M4C7T4	M4FFW8	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4CFB6_BRARP	M4DIL9_BRARP	M4CFB6	M4DIL9	COR domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.557
M4CFB6_BRARP	M4E2Z1_BRARP	M4CFB6	M4E2Z1	COR domain-containing protein.	Uncharacterized protein.	0.557
M4CFB6_BRARP	M4E743_BRARP	M4CFB6	M4E743	COR domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.557
M4CFB6_BRARP	M4EM81_BRARP	M4CFB6	M4EM81	COR domain-containing protein.	Uncharacterized protein.	0.557
M4CFB6_BRARP	M4F5R9_BRARP	M4CFB6	M4F5R9	COR domain-containing protein.	Uncharacterized protein.	0.557
M4CGK7_BRARP	M4CWN8_BRARP	M4CGK7	M4CWN8	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4CGK7_BRARP	M4D3E2_BRARP	M4CGK7	M4D3E2	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4CGK7_BRARP	M4D7L4_BRARP	M4CGK7	M4D7L4	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4CGK7_BRARP	M4DLG7_BRARP	M4CGK7	M4DLG7	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741
M4CGK7_BRARP	M4E453_BRARP	M4CGK7	M4E453	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.741

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