83 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	M4FAI9_BRARP	Uncharacterized protein. (62 aa)
	M4FBV6_BRARP	Uncharacterized protein. (152 aa)
	M4E9K2_BRARP	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (458 aa)
	M4FCN6_BRARP	DNA_pol_E_B domain-containing protein. (147 aa)
	M4FD12_BRARP	F-box domain-containing protein. (214 aa)
	M4FEL3_BRARP	Uncharacterized protein. (190 aa)
	M4ECQ2_BRARP	DNA polymerase. (1329 aa)
	M4ED00_BRARP	Uncharacterized protein. (131 aa)
	M4EDG1_BRARP	Uncharacterized protein. (208 aa)
	M4EDM3_BRARP	Uncharacterized protein. (238 aa)
	M4EHD5_BRARP	Uncharacterized protein. (76 aa)
	M4EI97_BRARP	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (431 aa)
	M4ELA3_BRARP	Uncharacterized protein. (366 aa)
	M4EMA4_BRARP	Chromo domain-containing protein. (622 aa)
	M4EMA7_BRARP	Uncharacterized protein. (260 aa)
	M4EQJ6_BRARP	Uncharacterized protein. (217 aa)
	M4ERU1_BRARP	Uncharacterized protein. (320 aa)
	M4ERZ3_BRARP	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	M4ES34_BRARP	DNA ligase. (757 aa)
	M4ES65_BRARP	Uncharacterized protein. (1296 aa)
	M4ETV5_BRARP	Uncharacterized protein. (251 aa)
	M4ETY2_BRARP	Uncharacterized protein. (61 aa)
	M4EUY2_BRARP	NAC domain-containing protein. (224 aa)
	M4FEL4_BRARP	Uncharacterized protein. (158 aa)
	M4FEL5_BRARP	Uncharacterized protein. (174 aa)
	M4FEW2_BRARP	Uncharacterized protein. (72 aa)
	M4FJ58_BRARP	Uncharacterized protein. (320 aa)
	M4E5Z0_BRARP	NAC domain-containing protein. (351 aa)
	M4EV20_BRARP	Uncharacterized protein. (603 aa)
	M4EV71_BRARP	Uncharacterized protein. (229 aa)
	M4EWK0_BRARP	Uncharacterized protein. (237 aa)
	M4EWW2_BRARP	NAC domain-containing protein. (225 aa)
	M4EX36_BRARP	Uncharacterized protein. (457 aa)
	M4EX37_BRARP	Uncharacterized protein. (180 aa)
	M4EYU5_BRARP	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (621 aa)
	M4EYW4_BRARP	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (454 aa)
	M4F2N4_BRARP	Uncharacterized protein. (208 aa)
	M4F2W2_BRARP	Uncharacterized protein. (326 aa)
	M4F4E5_BRARP	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (623 aa)
	M4F4H0_BRARP	Uncharacterized protein. (168 aa)
	M4F7L1_BRARP	Uncharacterized protein. (215 aa)
	M4F7L2_BRARP	Uncharacterized protein. (215 aa)
	M4DZL9_BRARP	Uncharacterized protein. (206 aa)
	M4DZM3_BRARP	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (803 aa)
	M4DZU5_BRARP	DUF223 domain-containing protein. (444 aa)
	M4DZU6_BRARP	DUF223 domain-containing protein. (223 aa)
	M4E0A9_BRARP	Uncharacterized protein. (86 aa)
	M4E334_BRARP	Uncharacterized protein. (282 aa)
	M4E574_BRARP	Uncharacterized protein. (138 aa)
	M4E649_BRARP	DNA polymerase. (1150 aa)
	M4CDX2_BRARP	NAC domain-containing protein. (324 aa)
	M4CF75_BRARP	Uncharacterized protein. (324 aa)
	M4CF76_BRARP	NAC domain-containing protein. (118 aa)
	M4CIR1_BRARP	Uncharacterized protein. (428 aa)
	M4CLM9_BRARP	Uncharacterized protein. (122 aa)
	M4CP24_BRARP	Uncharacterized protein. (471 aa)
	M4CQX8_BRARP	NAC domain-containing protein. (337 aa)
	FEN1	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (363 aa)
	M4D144_BRARP	NAC domain-containing protein. (636 aa)
	M4D1L2_BRARP	NAC domain-containing protein. (347 aa)
	M4D3I3_BRARP	NAC domain-containing protein. (344 aa)
	M4D6B5_BRARP	NAC domain-containing protein. (345 aa)
	M4D6L5_BRARP	Rep_fac-A_C domain-containing protein. (584 aa)
	M4D6M3_BRARP	DNA polymerase. (1225 aa)
	M4DCD7_BRARP	Uncharacterized protein. (292 aa)
	M4DCF7_BRARP	Protein kinase domain-containing protein. (249 aa)
	M4DFB5_BRARP	Rep-A_N domain-containing protein. (271 aa)
	M4DK66_BRARP	Uncharacterized protein. (369 aa)
	M4DM26_BRARP	F-box domain-containing protein. (233 aa)
	M4DM72_BRARP	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (805 aa)
	M4DMQ9_BRARP	Uncharacterized protein. (229 aa)
	M4DMU1_BRARP	Uncharacterized protein. (93 aa)
	M4DMY0_BRARP	Uncharacterized protein. (86 aa)
	M4DMY1_BRARP	Uncharacterized protein. (64 aa)
	M4DMY2_BRARP	Uncharacterized protein. (447 aa)
	M4DN93_BRARP	NAC domain-containing protein. (463 aa)
	M4DPD6_BRARP	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	M4DQ59_BRARP	DNA ligase. (732 aa)
	M4DSV6_BRARP	NAC domain-containing protein. (432 aa)
	M4DTZ3_BRARP	Uncharacterized protein. (124 aa)
	M4DUI9_BRARP	NAC domain-containing protein. (343 aa)
	M4DVH2_BRARP	Rep_fac-A_C domain-containing protein. (477 aa)
	M4DX04_BRARP	Uncharacterized protein. (136 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FEN1	M4CIR1_BRARP	M4D0B0	M4CIR1	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Uncharacterized protein.	0.848
FEN1	M4D6M3_BRARP	M4D0B0	M4D6M3	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA polymerase.	0.926
FEN1	M4DCF7_BRARP	M4D0B0	M4DCF7	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Protein kinase domain-containing protein.	0.988
FEN1	M4DK66_BRARP	M4D0B0	M4DK66	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Uncharacterized protein.	0.959
FEN1	M4DPD6_BRARP	M4D0B0	M4DPD6	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.995
FEN1	M4DQ59_BRARP	M4D0B0	M4DQ59	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA ligase.	0.974
FEN1	M4E649_BRARP	M4D0B0	M4E649	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA polymerase.	0.988
FEN1	M4E9K2_BRARP	M4D0B0	M4E9K2	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.923
FEN1	M4ECQ2_BRARP	M4D0B0	M4ECQ2	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA polymerase.	0.926
FEN1	M4EHD5_BRARP	M4D0B0	M4EHD5	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Uncharacterized protein.	0.926
FEN1	M4EI97_BRARP	M4D0B0	M4EI97	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.923
FEN1	M4ERZ3_BRARP	M4D0B0	M4ERZ3	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.995
FEN1	M4ES34_BRARP	M4D0B0	M4ES34	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA ligase.	0.974
FEN1	M4ES65_BRARP	M4D0B0	M4ES65	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	Uncharacterized protein.	0.984
FEN1	M4EYU5_BRARP	M4D0B0	M4EYU5	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.860
FEN1	M4EYW4_BRARP	M4D0B0	M4EYW4	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.848
FEN1	M4FCN6_BRARP	M4D0B0	M4FCN6	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	DNA_pol_E_B domain-containing protein.	0.959
M4CDX2_BRARP	M4CIR1_BRARP	M4CDX2	M4CIR1	NAC domain-containing protein.	Uncharacterized protein.	0.464
M4CDX2_BRARP	M4DCF7_BRARP	M4CDX2	M4DCF7	NAC domain-containing protein.	Protein kinase domain-containing protein.	0.478
M4CDX2_BRARP	M4DPD6_BRARP	M4CDX2	M4DPD6	NAC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.634

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