(28 nodes) p53-Independent DNA Damage Response network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4FHY4_BRARP	Uncharacterized protein. (132 aa)
	M4E743_BRARP	Ribosomal_S27 domain-containing protein. (210 aa)
	M4E920_BRARP	Uncharacterized protein. (551 aa)
	M4EDS8_BRARP	Uncharacterized protein. (229 aa)
	M4EEC9_BRARP	Uncharacterized protein. (76 aa)
	M4EER2_BRARP	Uncharacterized protein. (519 aa)
	M4EF94_BRARP	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (275 aa)
	M4EM81_BRARP	Uncharacterized protein. (220 aa)
	M4EW28_BRARP	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (273 aa)
	M4F2N3_BRARP	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (271 aa)
	M4F5R9_BRARP	Uncharacterized protein. (146 aa)
	M4F6W4_BRARP	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (250 aa)
	M4CBC0_BRARP	Uncharacterized protein. (1806 aa)
	M4CG29_BRARP	PI31_Prot_N domain-containing protein. (300 aa)
	M4CMX2_BRARP	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (1008 aa)
	M4CS44_BRARP	PI31_Prot_N domain-containing protein. (272 aa)
	M4D194_BRARP	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (233 aa)
	M4D453_BRARP	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (233 aa)
	M4D8Q1_BRARP	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (250 aa)
	M4DC55_BRARP	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family. (270 aa)
	M4DIL9_BRARP	Ribosomal_S27 domain-containing protein. (84 aa)
	M4DTG3_BRARP	Uncharacterized protein. (315 aa)
	M4DTG4_BRARP	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (274 aa)
	M4DZ63_BRARP	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (1004 aa)
	M4E1K0_BRARP	Uncharacterized protein. (109 aa)
	M4E299_BRARP	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (1004 aa)
	M4E2Z1_BRARP	Uncharacterized protein. (231 aa)
	M4E5G1_BRARP	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (233 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CBC0_BRARP	M4CG29_BRARP	M4CBC0	M4CG29	Uncharacterized protein.	PI31_Prot_N domain-containing protein.	0.545
M4CBC0_BRARP	M4CMX2_BRARP	M4CBC0	M4CMX2	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.845
M4CBC0_BRARP	M4CS44_BRARP	M4CBC0	M4CS44	Uncharacterized protein.	PI31_Prot_N domain-containing protein.	0.545
M4CBC0_BRARP	M4D194_BRARP	M4CBC0	M4D194	Uncharacterized protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.984
M4CBC0_BRARP	M4D453_BRARP	M4CBC0	M4D453	Uncharacterized protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.984
M4CBC0_BRARP	M4D8Q1_BRARP	M4CBC0	M4D8Q1	Uncharacterized protein.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.982
M4CBC0_BRARP	M4DC55_BRARP	M4CBC0	M4DC55	Uncharacterized protein.	Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1A family.	0.967
M4CBC0_BRARP	M4DIL9_BRARP	M4CBC0	M4DIL9	Uncharacterized protein.	Ribosomal_S27 domain-containing protein.	0.652
M4CBC0_BRARP	M4DTG3_BRARP	M4CBC0	M4DTG3	Uncharacterized protein.	Uncharacterized protein.	0.955
M4CBC0_BRARP	M4DTG4_BRARP	M4CBC0	M4DTG4	Uncharacterized protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.955
M4CBC0_BRARP	M4DZ63_BRARP	M4CBC0	M4DZ63	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.845
M4CBC0_BRARP	M4E1K0_BRARP	M4CBC0	M4E1K0	Uncharacterized protein.	Uncharacterized protein.	0.955
M4CBC0_BRARP	M4E299_BRARP	M4CBC0	M4E299	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.845
M4CBC0_BRARP	M4E2Z1_BRARP	M4CBC0	M4E2Z1	Uncharacterized protein.	Uncharacterized protein.	0.652
M4CBC0_BRARP	M4E5G1_BRARP	M4CBC0	M4E5G1	Uncharacterized protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.984
M4CBC0_BRARP	M4E743_BRARP	M4CBC0	M4E743	Uncharacterized protein.	Ribosomal_S27 domain-containing protein.	0.652
M4CBC0_BRARP	M4E920_BRARP	M4CBC0	M4E920	Uncharacterized protein.	Uncharacterized protein.	0.979
M4CBC0_BRARP	M4EDS8_BRARP	M4CBC0	M4EDS8	Uncharacterized protein.	Uncharacterized protein.	0.955
M4CBC0_BRARP	M4EEC9_BRARP	M4CBC0	M4EEC9	Uncharacterized protein.	Uncharacterized protein.	0.955
M4CBC0_BRARP	M4EER2_BRARP	M4CBC0	M4EER2	Uncharacterized protein.	Uncharacterized protein.	0.503

page 1 of 36

Server load: low (30%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About