22 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4EPS9_BRARP	COBRA-like protein; Belongs to the COBRA family. (417 aa)
	M4FHK9_BRARP	COBRA-like protein; Belongs to the COBRA family. (439 aa)
	M4FDJ2_BRARP	COBRA-like protein; Belongs to the COBRA family. (455 aa)
	M4F4Z3_BRARP	Uncharacterized protein. (662 aa)
	M4F4F1_BRARP	COBRA-like protein; Belongs to the COBRA family. (458 aa)
	M4F4E8_BRARP	Uncharacterized protein. (97 aa)
	M4F3W8_BRARP	Uncharacterized protein. (380 aa)
	M4EXJ1_BRARP	Uncharacterized protein. (659 aa)
	M4EC69_BRARP	Uncharacterized protein. (653 aa)
	M4E9F0_BRARP	COBRA-like protein; Belongs to the COBRA family. (436 aa)
	M4E587_BRARP	Uncharacterized protein. (672 aa)
	M4E425_BRARP	COBRA-like protein; Belongs to the COBRA family. (434 aa)
	M4DXG2_BRARP	Uncharacterized protein. (667 aa)
	M4DUI0_BRARP	Uncharacterized protein. (161 aa)
	M4DUF8_BRARP	Uncharacterized protein. (259 aa)
	M4DTZ9_BRARP	COBRA-like protein; Belongs to the COBRA family. (397 aa)
	M4D936_BRARP	COBRA-like protein; Belongs to the COBRA family. (457 aa)
	M4D933_BRARP	Uncharacterized protein. (206 aa)
	M4D1R1_BRARP	Uncharacterized protein. (663 aa)
	M4CWT7_BRARP	Uncharacterized protein. (387 aa)
	M4CQ24_BRARP	F-box domain-containing protein. (849 aa)
	M4CC65_BRARP	Uncharacterized protein. (668 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CWT7_BRARP	M4DUF8_BRARP	M4CWT7	M4DUF8	Uncharacterized protein.	Uncharacterized protein.	0.513
M4D933_BRARP	M4DUF8_BRARP	M4D933	M4DUF8	Uncharacterized protein.	Uncharacterized protein.	0.450
M4D933_BRARP	M4F3W8_BRARP	M4D933	M4F3W8	Uncharacterized protein.	Uncharacterized protein.	0.459
M4DUF8_BRARP	M4CWT7_BRARP	M4DUF8	M4CWT7	Uncharacterized protein.	Uncharacterized protein.	0.513
M4DUF8_BRARP	M4D933_BRARP	M4DUF8	M4D933	Uncharacterized protein.	Uncharacterized protein.	0.450
M4F3W8_BRARP	M4D933_BRARP	M4F3W8	M4D933	Uncharacterized protein.	Uncharacterized protein.	0.459
M4F3W8_BRARP	M4F4E8_BRARP	M4F3W8	M4F4E8	Uncharacterized protein.	Uncharacterized protein.	0.453
M4F4E8_BRARP	M4F3W8_BRARP	M4F4E8	M4F3W8	Uncharacterized protein.	Uncharacterized protein.	0.453

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