19 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4E8B3_BRARP	Uncharacterized protein. (1006 aa)
	M4E9K6_BRARP	Uncharacterized protein. (706 aa)
	M4EP34_BRARP	Uncharacterized protein. (748 aa)
	M4FIX4_BRARP	Uncharacterized protein. (384 aa)
	M4FCR6_BRARP	Uncharacterized protein. (318 aa)
	M4FC74_BRARP	Uncharacterized protein. (1948 aa)
	M4F149_BRARP	Uncharacterized protein. (1930 aa)
	M4F0H6_BRARP	Uncharacterized protein. (962 aa)
	M4EZG5_BRARP	TPR_REGION domain-containing protein. (1015 aa)
	M4ET00_BRARP	Uncharacterized protein. (667 aa)
	M4C9E5_BRARP	Uncharacterized protein. (574 aa)
	M4D1N2_BRARP	Uncharacterized protein. (646 aa)
	M4DBC4_BRARP	RRM domain-containing protein. (823 aa)
	M4DFL4_BRARP	Uncharacterized protein. (748 aa)
	M4DJB0_BRARP	TPR_REGION domain-containing protein. (724 aa)
	M4DVS5_BRARP	TPR_REGION domain-containing protein. (913 aa)
	M4E094_BRARP	TPR_REGION domain-containing protein. (630 aa)
	M4EI89_BRARP	Uncharacterized protein. (706 aa)
	M4E0E1_BRARP	Uncharacterized protein. (1152 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C9E5_BRARP	M4DBC4_BRARP	M4C9E5	M4DBC4	Uncharacterized protein.	RRM domain-containing protein.	0.580
M4C9E5_BRARP	M4DVS5_BRARP	M4C9E5	M4DVS5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.589
M4C9E5_BRARP	M4E9K6_BRARP	M4C9E5	M4E9K6	Uncharacterized protein.	Uncharacterized protein.	0.439
M4C9E5_BRARP	M4EI89_BRARP	M4C9E5	M4EI89	Uncharacterized protein.	Uncharacterized protein.	0.440
M4C9E5_BRARP	M4ET00_BRARP	M4C9E5	M4ET00	Uncharacterized protein.	Uncharacterized protein.	0.441
M4C9E5_BRARP	M4EZG5_BRARP	M4C9E5	M4EZG5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.901
M4C9E5_BRARP	M4F0H6_BRARP	M4C9E5	M4F0H6	Uncharacterized protein.	Uncharacterized protein.	0.902
M4C9E5_BRARP	M4FCR6_BRARP	M4C9E5	M4FCR6	Uncharacterized protein.	Uncharacterized protein.	0.431
M4C9E5_BRARP	M4FIX4_BRARP	M4C9E5	M4FIX4	Uncharacterized protein.	Uncharacterized protein.	0.512
M4D1N2_BRARP	M4F149_BRARP	M4D1N2	M4F149	Uncharacterized protein.	Uncharacterized protein.	0.988
M4D1N2_BRARP	M4FC74_BRARP	M4D1N2	M4FC74	Uncharacterized protein.	Uncharacterized protein.	0.988
M4DBC4_BRARP	M4C9E5_BRARP	M4DBC4	M4C9E5	RRM domain-containing protein.	Uncharacterized protein.	0.580
M4DBC4_BRARP	M4EZG5_BRARP	M4DBC4	M4EZG5	RRM domain-containing protein.	TPR_REGION domain-containing protein.	0.580
M4DBC4_BRARP	M4F0H6_BRARP	M4DBC4	M4F0H6	RRM domain-containing protein.	Uncharacterized protein.	0.580
M4DBC4_BRARP	M4F149_BRARP	M4DBC4	M4F149	RRM domain-containing protein.	Uncharacterized protein.	0.454
M4DBC4_BRARP	M4FC74_BRARP	M4DBC4	M4FC74	RRM domain-containing protein.	Uncharacterized protein.	0.454
M4DFL4_BRARP	M4E8B3_BRARP	M4DFL4	M4E8B3	Uncharacterized protein.	Uncharacterized protein.	0.575
M4DFL4_BRARP	M4EP34_BRARP	M4DFL4	M4EP34	Uncharacterized protein.	Uncharacterized protein.	0.544
M4DVS5_BRARP	M4C9E5_BRARP	M4DVS5	M4C9E5	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.589
M4DVS5_BRARP	M4E9K6_BRARP	M4DVS5	M4E9K6	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.963

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