6 items (Ciona savignyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y7Z9_CIOSA	ULP_PROTEASE domain-containing protein. (198 aa)
	H2YJ57_CIOSA	Protein kinase domain-containing protein. (153 aa)
	H2YPZ6_CIOSA	Uncharacterized protein. (206 aa)
	H2ZBH2_CIOSA	WD_REPEATS_REGION domain-containing protein. (436 aa)
	H2ZMA8_CIOSA	ULP_PROTEASE domain-containing protein. (310 aa)
	H2ZP16_CIOSA	Ipi1_N domain-containing protein. (258 aa)

Your Current Organism:

Ciona savignyi

NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2Y7Z9_CIOSA	H2YJ57_CIOSA	ENSCSAVP00000001447	ENSCSAVP00000005356	ULP_PROTEASE domain-containing protein.	Protein kinase domain-containing protein.	0.537
H2Y7Z9_CIOSA	H2YPZ6_CIOSA	ENSCSAVP00000001447	ENSCSAVP00000007404	ULP_PROTEASE domain-containing protein.	Uncharacterized protein.	0.716
H2Y7Z9_CIOSA	H2ZBH2_CIOSA	ENSCSAVP00000001447	ENSCSAVP00000014937	ULP_PROTEASE domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.788
H2Y7Z9_CIOSA	H2ZMA8_CIOSA	ENSCSAVP00000001447	ENSCSAVP00000018724	ULP_PROTEASE domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.869
H2Y7Z9_CIOSA	H2ZP16_CIOSA	ENSCSAVP00000001447	ENSCSAVP00000019332	ULP_PROTEASE domain-containing protein.	Ipi1_N domain-containing protein.	0.787
H2YJ57_CIOSA	H2Y7Z9_CIOSA	ENSCSAVP00000005356	ENSCSAVP00000001447	Protein kinase domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.537
H2YJ57_CIOSA	H2YPZ6_CIOSA	ENSCSAVP00000005356	ENSCSAVP00000007404	Protein kinase domain-containing protein.	Uncharacterized protein.	0.693
H2YJ57_CIOSA	H2ZBH2_CIOSA	ENSCSAVP00000005356	ENSCSAVP00000014937	Protein kinase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.817
H2YJ57_CIOSA	H2ZMA8_CIOSA	ENSCSAVP00000005356	ENSCSAVP00000018724	Protein kinase domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.500
H2YJ57_CIOSA	H2ZP16_CIOSA	ENSCSAVP00000005356	ENSCSAVP00000019332	Protein kinase domain-containing protein.	Ipi1_N domain-containing protein.	0.795
H2YPZ6_CIOSA	H2Y7Z9_CIOSA	ENSCSAVP00000007404	ENSCSAVP00000001447	Uncharacterized protein.	ULP_PROTEASE domain-containing protein.	0.716
H2YPZ6_CIOSA	H2YJ57_CIOSA	ENSCSAVP00000007404	ENSCSAVP00000005356	Uncharacterized protein.	Protein kinase domain-containing protein.	0.693
H2YPZ6_CIOSA	H2ZBH2_CIOSA	ENSCSAVP00000007404	ENSCSAVP00000014937	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.982
H2YPZ6_CIOSA	H2ZMA8_CIOSA	ENSCSAVP00000007404	ENSCSAVP00000018724	Uncharacterized protein.	ULP_PROTEASE domain-containing protein.	0.685
H2YPZ6_CIOSA	H2ZP16_CIOSA	ENSCSAVP00000007404	ENSCSAVP00000019332	Uncharacterized protein.	Ipi1_N domain-containing protein.	0.936
H2ZBH2_CIOSA	H2Y7Z9_CIOSA	ENSCSAVP00000014937	ENSCSAVP00000001447	WD_REPEATS_REGION domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.788
H2ZBH2_CIOSA	H2YJ57_CIOSA	ENSCSAVP00000014937	ENSCSAVP00000005356	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein.	0.817
H2ZBH2_CIOSA	H2YPZ6_CIOSA	ENSCSAVP00000014937	ENSCSAVP00000007404	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.982
H2ZBH2_CIOSA	H2ZMA8_CIOSA	ENSCSAVP00000014937	ENSCSAVP00000018724	WD_REPEATS_REGION domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.606
H2ZBH2_CIOSA	H2ZP16_CIOSA	ENSCSAVP00000014937	ENSCSAVP00000019332	WD_REPEATS_REGION domain-containing protein.	Ipi1_N domain-containing protein.	0.998