(19 nodes) RNA recognition motif network (Ciona savignyi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y4U0_CIOSA	Uncharacterized protein. (315 aa)
	H2Y680_CIOSA	Uncharacterized protein. (348 aa)
	H2YGB5_CIOSA	Uncharacterized protein. (289 aa)
	H2YGR1_CIOSA	RRM domain-containing protein. (183 aa)
	H2YI67_CIOSA	Uncharacterized protein. (451 aa)
	H2YKY1_CIOSA	RRM domain-containing protein. (165 aa)
	H2YPF6_CIOSA	KH domain-containing protein. (122 aa)
	H2YSH7_CIOSA	RRM domain-containing protein. (148 aa)
	H2YTF8_CIOSA	RRM domain-containing protein. (226 aa)
	H2YVF7_CIOSA	Protein kinase domain-containing protein. (721 aa)
	H2YYD7_CIOSA	Uncharacterized protein. (233 aa)
	H2Z4P3_CIOSA	Uncharacterized protein. (246 aa)
	H2ZBZ6_CIOSA	Uncharacterized protein. (511 aa)
	H2ZDI5_CIOSA	RRM domain-containing protein. (178 aa)
	H2ZGC1_CIOSA	Uncharacterized protein. (354 aa)
	H2ZIC9_CIOSA	Uncharacterized protein. (172 aa)
	H2ZLI5_CIOSA	RRM domain-containing protein. (279 aa)
	H2ZLP8_CIOSA	Uncharacterized protein. (220 aa)
	H2ZP83_CIOSA	Uncharacterized protein. (252 aa)

Your Current Organism:

Ciona savignyi

NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2Y4U0_CIOSA	H2Y680_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000000828	Uncharacterized protein.	Uncharacterized protein.	0.679
H2Y4U0_CIOSA	H2YGB5_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000004364	Uncharacterized protein.	Uncharacterized protein.	0.707
H2Y4U0_CIOSA	H2YGR1_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000004510	Uncharacterized protein.	RRM domain-containing protein.	0.751
H2Y4U0_CIOSA	H2YI67_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000005016	Uncharacterized protein.	Uncharacterized protein.	0.682
H2Y4U0_CIOSA	H2YKY1_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000005983	Uncharacterized protein.	RRM domain-containing protein.	0.726
H2Y4U0_CIOSA	H2YPF6_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000007214	Uncharacterized protein.	KH domain-containing protein.	0.664
H2Y4U0_CIOSA	H2YSH7_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000008287	Uncharacterized protein.	RRM domain-containing protein.	0.691
H2Y4U0_CIOSA	H2YTF8_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000008618	Uncharacterized protein.	RRM domain-containing protein.	0.598
H2Y4U0_CIOSA	H2YYD7_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000010348	Uncharacterized protein.	Uncharacterized protein.	0.726
H2Y4U0_CIOSA	H2Z4P3_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000012555	Uncharacterized protein.	Uncharacterized protein.	0.687
H2Y4U0_CIOSA	H2ZBZ6_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000015112	Uncharacterized protein.	Uncharacterized protein.	0.738
H2Y4U0_CIOSA	H2ZDI5_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000015651	Uncharacterized protein.	RRM domain-containing protein.	0.871
H2Y4U0_CIOSA	H2ZIC9_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000017345	Uncharacterized protein.	Uncharacterized protein.	0.778
H2Y4U0_CIOSA	H2ZLI5_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000018451	Uncharacterized protein.	RRM domain-containing protein.	0.800
H2Y4U0_CIOSA	H2ZLP8_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000018514	Uncharacterized protein.	Uncharacterized protein.	0.765
H2Y4U0_CIOSA	H2ZP83_CIOSA	ENSCSAVP00000000338	ENSCSAVP00000019399	Uncharacterized protein.	Uncharacterized protein.	0.794
H2Y680_CIOSA	H2Y4U0_CIOSA	ENSCSAVP00000000828	ENSCSAVP00000000338	Uncharacterized protein.	Uncharacterized protein.	0.679
H2Y680_CIOSA	H2YGB5_CIOSA	ENSCSAVP00000000828	ENSCSAVP00000004364	Uncharacterized protein.	Uncharacterized protein.	0.779
H2Y680_CIOSA	H2YGR1_CIOSA	ENSCSAVP00000000828	ENSCSAVP00000004510	Uncharacterized protein.	RRM domain-containing protein.	0.815
H2Y680_CIOSA	H2YKY1_CIOSA	ENSCSAVP00000000828	ENSCSAVP00000005983	Uncharacterized protein.	RRM domain-containing protein.	0.767