(7 nodes) Mixed, incl. K Homology domain, type 1, and Positive regulation of mRNA splicing, via spliceosome network (Ciona savignyi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y680_CIOSA	Uncharacterized protein. (348 aa)
	H2YPF6_CIOSA	KH domain-containing protein. (122 aa)
	H2YSH7_CIOSA	RRM domain-containing protein. (148 aa)
	H2ZBZ6_CIOSA	Uncharacterized protein. (511 aa)
	H2ZGC1_CIOSA	Uncharacterized protein. (354 aa)
	H2ZIC9_CIOSA	Uncharacterized protein. (172 aa)
	H2ZLI5_CIOSA	RRM domain-containing protein. (279 aa)

Your Current Organism:

Ciona savignyi

NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2Y680_CIOSA	H2YPF6_CIOSA	ENSCSAVP00000000828	ENSCSAVP00000007214	Uncharacterized protein.	KH domain-containing protein.	0.736
H2Y680_CIOSA	H2YSH7_CIOSA	ENSCSAVP00000000828	ENSCSAVP00000008287	Uncharacterized protein.	RRM domain-containing protein.	0.832
H2Y680_CIOSA	H2ZBZ6_CIOSA	ENSCSAVP00000000828	ENSCSAVP00000015112	Uncharacterized protein.	Uncharacterized protein.	0.749
H2Y680_CIOSA	H2ZGC1_CIOSA	ENSCSAVP00000000828	ENSCSAVP00000016637	Uncharacterized protein.	Uncharacterized protein.	0.678
H2Y680_CIOSA	H2ZIC9_CIOSA	ENSCSAVP00000000828	ENSCSAVP00000017345	Uncharacterized protein.	Uncharacterized protein.	0.928
H2Y680_CIOSA	H2ZLI5_CIOSA	ENSCSAVP00000000828	ENSCSAVP00000018451	Uncharacterized protein.	RRM domain-containing protein.	0.842
H2YPF6_CIOSA	H2Y680_CIOSA	ENSCSAVP00000007214	ENSCSAVP00000000828	KH domain-containing protein.	Uncharacterized protein.	0.736
H2YPF6_CIOSA	H2YSH7_CIOSA	ENSCSAVP00000007214	ENSCSAVP00000008287	KH domain-containing protein.	RRM domain-containing protein.	0.829
H2YPF6_CIOSA	H2ZBZ6_CIOSA	ENSCSAVP00000007214	ENSCSAVP00000015112	KH domain-containing protein.	Uncharacterized protein.	0.621
H2YPF6_CIOSA	H2ZGC1_CIOSA	ENSCSAVP00000007214	ENSCSAVP00000016637	KH domain-containing protein.	Uncharacterized protein.	0.664
H2YPF6_CIOSA	H2ZIC9_CIOSA	ENSCSAVP00000007214	ENSCSAVP00000017345	KH domain-containing protein.	Uncharacterized protein.	0.829
H2YPF6_CIOSA	H2ZLI5_CIOSA	ENSCSAVP00000007214	ENSCSAVP00000018451	KH domain-containing protein.	RRM domain-containing protein.	0.617
H2YSH7_CIOSA	H2Y680_CIOSA	ENSCSAVP00000008287	ENSCSAVP00000000828	RRM domain-containing protein.	Uncharacterized protein.	0.832
H2YSH7_CIOSA	H2YPF6_CIOSA	ENSCSAVP00000008287	ENSCSAVP00000007214	RRM domain-containing protein.	KH domain-containing protein.	0.829
H2YSH7_CIOSA	H2ZBZ6_CIOSA	ENSCSAVP00000008287	ENSCSAVP00000015112	RRM domain-containing protein.	Uncharacterized protein.	0.585
H2YSH7_CIOSA	H2ZGC1_CIOSA	ENSCSAVP00000008287	ENSCSAVP00000016637	RRM domain-containing protein.	Uncharacterized protein.	0.684
H2YSH7_CIOSA	H2ZIC9_CIOSA	ENSCSAVP00000008287	ENSCSAVP00000017345	RRM domain-containing protein.	Uncharacterized protein.	0.906
H2YSH7_CIOSA	H2ZLI5_CIOSA	ENSCSAVP00000008287	ENSCSAVP00000018451	RRM domain-containing protein.	RRM domain-containing protein.	0.733
H2ZBZ6_CIOSA	H2Y680_CIOSA	ENSCSAVP00000015112	ENSCSAVP00000000828	Uncharacterized protein.	Uncharacterized protein.	0.749
H2ZBZ6_CIOSA	H2YPF6_CIOSA	ENSCSAVP00000015112	ENSCSAVP00000007214	Uncharacterized protein.	KH domain-containing protein.	0.621