(5 nodes) HnRNP-L/PTB, and Zinc finger, RanBP2-type superfamily network (Ciona savignyi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y866_CIOSA	Uncharacterized protein. (187 aa)
	H2YSD6_CIOSA	Uncharacterized protein. (441 aa)
	H2YUC7_CIOSA	Uncharacterized protein. (446 aa)
	H2Z4X7_CIOSA	Uncharacterized protein. (522 aa)
	H2ZID4_CIOSA	KH domain-containing protein. (171 aa)

Your Current Organism:

Ciona savignyi

NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2Y866_CIOSA	H2YSD6_CIOSA	ENSCSAVP00000001514	ENSCSAVP00000008246	Uncharacterized protein.	Uncharacterized protein.	0.799
H2Y866_CIOSA	H2YUC7_CIOSA	ENSCSAVP00000001514	ENSCSAVP00000008937	Uncharacterized protein.	Uncharacterized protein.	0.744
H2Y866_CIOSA	H2Z4X7_CIOSA	ENSCSAVP00000001514	ENSCSAVP00000012639	Uncharacterized protein.	Uncharacterized protein.	0.688
H2Y866_CIOSA	H2ZID4_CIOSA	ENSCSAVP00000001514	ENSCSAVP00000017350	Uncharacterized protein.	KH domain-containing protein.	0.771
H2YSD6_CIOSA	H2Y866_CIOSA	ENSCSAVP00000008246	ENSCSAVP00000001514	Uncharacterized protein.	Uncharacterized protein.	0.799
H2YSD6_CIOSA	H2YUC7_CIOSA	ENSCSAVP00000008246	ENSCSAVP00000008937	Uncharacterized protein.	Uncharacterized protein.	0.839
H2YSD6_CIOSA	H2Z4X7_CIOSA	ENSCSAVP00000008246	ENSCSAVP00000012639	Uncharacterized protein.	Uncharacterized protein.	0.880
H2YSD6_CIOSA	H2ZID4_CIOSA	ENSCSAVP00000008246	ENSCSAVP00000017350	Uncharacterized protein.	KH domain-containing protein.	0.836
H2YUC7_CIOSA	H2Y866_CIOSA	ENSCSAVP00000008937	ENSCSAVP00000001514	Uncharacterized protein.	Uncharacterized protein.	0.744
H2YUC7_CIOSA	H2YSD6_CIOSA	ENSCSAVP00000008937	ENSCSAVP00000008246	Uncharacterized protein.	Uncharacterized protein.	0.839
H2YUC7_CIOSA	H2Z4X7_CIOSA	ENSCSAVP00000008937	ENSCSAVP00000012639	Uncharacterized protein.	Uncharacterized protein.	0.696
H2YUC7_CIOSA	H2ZID4_CIOSA	ENSCSAVP00000008937	ENSCSAVP00000017350	Uncharacterized protein.	KH domain-containing protein.	0.875
H2Z4X7_CIOSA	H2Y866_CIOSA	ENSCSAVP00000012639	ENSCSAVP00000001514	Uncharacterized protein.	Uncharacterized protein.	0.688
H2Z4X7_CIOSA	H2YSD6_CIOSA	ENSCSAVP00000012639	ENSCSAVP00000008246	Uncharacterized protein.	Uncharacterized protein.	0.880
H2Z4X7_CIOSA	H2YUC7_CIOSA	ENSCSAVP00000012639	ENSCSAVP00000008937	Uncharacterized protein.	Uncharacterized protein.	0.696
H2Z4X7_CIOSA	H2ZID4_CIOSA	ENSCSAVP00000012639	ENSCSAVP00000017350	Uncharacterized protein.	KH domain-containing protein.	0.817
H2ZID4_CIOSA	H2Y866_CIOSA	ENSCSAVP00000017350	ENSCSAVP00000001514	KH domain-containing protein.	Uncharacterized protein.	0.771
H2ZID4_CIOSA	H2YSD6_CIOSA	ENSCSAVP00000017350	ENSCSAVP00000008246	KH domain-containing protein.	Uncharacterized protein.	0.836
H2ZID4_CIOSA	H2YUC7_CIOSA	ENSCSAVP00000017350	ENSCSAVP00000008937	KH domain-containing protein.	Uncharacterized protein.	0.875
H2ZID4_CIOSA	H2Z4X7_CIOSA	ENSCSAVP00000017350	ENSCSAVP00000012639	KH domain-containing protein.	Uncharacterized protein.	0.817