(30 nodes) RNA polymerase network (Ciona savignyi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Z3E8_CIOSA	Uncharacterized protein. (347 aa)
	H2ZCM9_CIOSA	TFIIS central domain-containing protein. (351 aa)
	H2ZCM5_CIOSA	PHD-type domain-containing protein. (238 aa)
	H2ZAS8_CIOSA	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (525 aa)
	H2Z9J0_CIOSA	RPOL4c domain-containing protein. (145 aa)
	H2Z9E6_CIOSA	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1971 aa)
	H2Z908_CIOSA	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	H2Z7P9_CIOSA	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1144 aa)
	H2Z3P5_CIOSA	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1732 aa)
	H2Z3H0_CIOSA	RNA_pol_Rpb5_C domain-containing protein. (80 aa)
	H2ZED2_CIOSA	Uncharacterized protein. (79 aa)
	H2Z399_CIOSA	Uncharacterized protein. (447 aa)
	H2Z2N0_CIOSA	RNA_pol_L_2 domain-containing protein. (117 aa)
	H2YYP3_CIOSA	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (152 aa)
	H2YYA0_CIOSA	Uncharacterized protein. (67 aa)
	H2YWX4_CIOSA	Uncharacterized protein. (270 aa)
	H2YUS2_CIOSA	Transcriptional adapter. (425 aa)
	H2YJT7_CIOSA	Uncharacterized protein. (225 aa)
	H2YHM7_CIOSA	TFIIS N-terminal domain-containing protein. (167 aa)
	H2YGP8_CIOSA	S1 motif domain-containing protein. (172 aa)
	H2YGG7_CIOSA	Endo/exonuclease/phosphatase domain-containing protein. (428 aa)
	H2YEA9_CIOSA	RPOLD domain-containing protein. (277 aa)
	H2YA29_CIOSA	RBR-type E3 ubiquitin transferase. (404 aa)
	H2Y4I7_CIOSA	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1248 aa)
	H2Y4C9_CIOSA	Uncharacterized protein; Belongs to the argonaute family. (793 aa)
	H2ZKE3_CIOSA	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	H2ZJI5_CIOSA	Uncharacterized protein. (204 aa)
	H2ZJF8_CIOSA	Uncharacterized protein. (331 aa)
	H2ZH13_CIOSA	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1336 aa)
	H2Y3W5_CIOSA	Peptidase_M14 domain-containing protein. (178 aa)

Your Current Organism:

Ciona savignyi

NCBI taxonomy Id: 51511
Other names: C. savignyi, Pacific transparent sea squirt, transparent tunicate

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2Y4I7_CIOSA	H2YEA9_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000003657	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.999
H2Y4I7_CIOSA	H2YGP8_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000004497	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	S1 motif domain-containing protein.	0.998
H2Y4I7_CIOSA	H2YHM7_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000004826	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TFIIS N-terminal domain-containing protein.	0.962
H2Y4I7_CIOSA	H2YJT7_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000005586	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.973
H2Y4I7_CIOSA	H2YWX4_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000009835	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.968
H2Y4I7_CIOSA	H2YYA0_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000010311	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.998
H2Y4I7_CIOSA	H2YYP3_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000010454	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.998
H2Y4I7_CIOSA	H2Z2N0_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000011842	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_L_2 domain-containing protein.	0.998
H2Y4I7_CIOSA	H2Z3E8_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000012110	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.957
H2Y4I7_CIOSA	H2Z3H0_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000012132	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA_pol_Rpb5_C domain-containing protein.	0.999
H2Y4I7_CIOSA	H2Z3P5_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000012207	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.986
H2Y4I7_CIOSA	H2Z908_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000014073	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.894
H2Y4I7_CIOSA	H2Z9E6_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000014211	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
H2Y4I7_CIOSA	H2Z9J0_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000014255	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.998
H2Y4I7_CIOSA	H2ZAS8_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000014693	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.970
H2Y4I7_CIOSA	H2ZCM5_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000015341	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	PHD-type domain-containing protein.	0.747
H2Y4I7_CIOSA	H2ZCM9_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000015345	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TFIIS central domain-containing protein.	0.748
H2Y4I7_CIOSA	H2ZED2_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000015948	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.998
H2Y4I7_CIOSA	H2ZH13_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000016879	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.983
H2Y4I7_CIOSA	H2ZJF8_CIOSA	ENSCSAVP00000000235	ENSCSAVP00000017724	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.996