(28 nodes) Periplasmic binding protein-like I network (Butyrivibrio proteoclasticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bpr_I0114	Transcriptional regulator LacI family. (346 aa)
	livJ	Branched-chain amino acid ABC transporter substrate-binding protein LivJ. (449 aa)
	bpr_I0696	Transcriptional regulator LacI family. (337 aa)
	bpr_I0881	Sugar ABC transporter substrate-binding protein. (354 aa)
	bpr_I0909	Sugar ABC transporter substrate-binding protein. (400 aa)
	bpr_I0934	Transcriptional regulator LacI family. (349 aa)
	bpr_I1169	Sugar ABC transporter substrate-binding protein. (365 aa)
	bpr_I1172	Xylose ABC transporter substrate binding protein. (349 aa)
	bpr_I1173	Xylose ABC transporter substrate-binding protein. (359 aa)
	bpr_I1560	Bmp family protein. (393 aa)
	bpr_I1592	Transcriptional regulator LacI family. (340 aa)
	bpr_I1708	Transcriptional regulator LacI family. (350 aa)
	bpr_I1817	Transcriptional regulator LacI family. (340 aa)
	bpr_I1954	Transcriptional regulator LacI family. (352 aa)
	bpr_I2007	Transcriptional regulator LacI family. (332 aa)
	bpr_I2116	Sugar ABC transporter substrate-binding protein. (335 aa)
	bpr_I2119	Transcriptional regulator LacI family. (329 aa)
	bpr_I2252	GGDEF domain-containing protein. (620 aa)
	bpr_I2263	Transcriptional regulator LacI family. (338 aa)
	bpr_I2428	Transcriptional regulator LacI family. (342 aa)
	bpr_I2446	Transcriptional regulator LacI family. (343 aa)
	bpr_I2716	Transcriptional regulator LacI family. (340 aa)
	bpr_I2816	Transcriptional regulator GntR family. (363 aa)
	bpr_I2936	Transcriptional regulator LacI family. (351 aa)
	ADL35898.1	Sugar ABC transporter substrate-binding protein. (365 aa)
	ADL35926.1	Sugar ABC transporter substrate-binding protein. (348 aa)
	ADL35930.1	Sugar ABC transporter substrate-binding protein. (330 aa)
	ADL35934.1	Sugar ABC transporter substrate-binding protein. (394 aa)

Your Current Organism:

Butyrivibrio proteoclasticus

NCBI taxonomy Id: 515622
Other names: B. proteoclasticus B316, Butyrivibrio proteoclasticus B316, Butyrivibrio proteoclasticus str. B316, Butyrivibrio proteoclasticus strain B316

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADL35898.1	ADL35926.1	bpr_III212	bpr_III240	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.414
ADL35898.1	ADL35934.1	bpr_III212	bpr_III248	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.536
ADL35898.1	bpr_I1169	bpr_III212	bpr_I1169	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.922
ADL35898.1	bpr_I1172	bpr_III212	bpr_I1172	Sugar ABC transporter substrate-binding protein.	Xylose ABC transporter substrate binding protein.	0.614
ADL35898.1	bpr_I1173	bpr_III212	bpr_I1173	Sugar ABC transporter substrate-binding protein.	Xylose ABC transporter substrate-binding protein.	0.544
ADL35926.1	ADL35898.1	bpr_III240	bpr_III212	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.414
ADL35926.1	ADL35930.1	bpr_III240	bpr_III244	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.956
ADL35926.1	ADL35934.1	bpr_III240	bpr_III248	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.770
ADL35926.1	bpr_I0881	bpr_III240	bpr_I0881	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.692
ADL35926.1	bpr_I1172	bpr_III240	bpr_I1172	Sugar ABC transporter substrate-binding protein.	Xylose ABC transporter substrate binding protein.	0.758
ADL35926.1	bpr_I1173	bpr_III240	bpr_I1173	Sugar ABC transporter substrate-binding protein.	Xylose ABC transporter substrate-binding protein.	0.742
ADL35926.1	bpr_I2116	bpr_III240	bpr_I2116	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.731
ADL35930.1	ADL35926.1	bpr_III244	bpr_III240	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.956
ADL35930.1	ADL35934.1	bpr_III244	bpr_III248	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.522
ADL35930.1	bpr_I0881	bpr_III244	bpr_I0881	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.665
ADL35930.1	bpr_I1172	bpr_III244	bpr_I1172	Sugar ABC transporter substrate-binding protein.	Xylose ABC transporter substrate binding protein.	0.722
ADL35930.1	bpr_I2116	bpr_III244	bpr_I2116	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.721
ADL35934.1	ADL35898.1	bpr_III248	bpr_III212	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.536
ADL35934.1	ADL35926.1	bpr_III248	bpr_III240	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.770
ADL35934.1	ADL35930.1	bpr_III248	bpr_III244	Sugar ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.522

page 1 of 4

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2025

Credits

Access

Info

About