(21 nodes) snoRNA binding network (Podospora anserina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A090CFN8	Putative Ribosome biogenesis protein BMS1 homolog. (1168 aa)
	A0A090CJT7	Uncharacterized protein. (591 aa)
	PODANS_5_2210	Podospora anserina S mat+ genomic DNA chromosome 5, supercontig 1. (413 aa)
	PODANS_5_12950	Podospora anserina S mat+ genomic DNA chromosome 5, supercontig 3. (512 aa)
	PODANS_7_1410	Podospora anserina S mat+ genomic DNA chromosome 7, supercontig 3. (905 aa)
	PODANS_1_17590	Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 4. (961 aa)
	PODANS_7_1690	Podospora anserina S mat+ genomic DNA chromosome 7, supercontig 1. (1768 aa)
	PODANS_7_6350	Podospora anserina S mat+ genomic DNA chromosome 7, supercontig 1. (1779 aa)
	PODANS_1_10300	Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 2. (912 aa)
	PODANS_3_4970	Podospora anserina S mat+ genomic DNA chromosome 3, supercontig 2. (813 aa)
	PODANS_6_4910	Podospora anserina S mat+ genomic DNA chromosome 6, supercontig 2. (546 aa)
	PODANS_6_3390	Podospora anserina S mat+ genomic DNA chromosome 6, supercontig 2. (472 aa)
	A0A090CBS5	Putative U3 small nucleolar RNA-associated protein 17. (944 aa)
	UTP25	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (660 aa)
	PODANS_2_1860	Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2. (183 aa)
	PODANS_2_2970	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	PODANS_2_6760	Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2. (62 aa)
	PODANS_2_9240	Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2. (909 aa)
	PODANS_2_9720	Putative U3 small nucleolar ribonucleoprotein protein similar to IMP4 of Debaryomyces hansenii. (296 aa)
	PODANS_2_12720	Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2. (225 aa)
	PODANS_2_13250	Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2. (546 aa)

Your Current Organism:

Podospora anserina

NCBI taxonomy Id: 515849
Other names: P. anserina S mat+, Podospora anserina FGSC #10383, Podospora anserina S mat+

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A090CBS5	A0A090CFN8	A0A090CBS5	A0A090CFN8	Putative U3 small nucleolar RNA-associated protein 17.	Putative Ribosome biogenesis protein BMS1 homolog.	0.999
A0A090CBS5	A0A090CJT7	A0A090CBS5	A0A090CJT7	Putative U3 small nucleolar RNA-associated protein 17.	Uncharacterized protein.	0.998
A0A090CBS5	PODANS_1_10300	A0A090CBS5	B2AY92	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 2.	0.999
A0A090CBS5	PODANS_1_17590	A0A090CBS5	B2AU08	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 1, supercontig 4.	0.998
A0A090CBS5	PODANS_2_12720	A0A090CBS5	B2B7Z0	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2.	0.848
A0A090CBS5	PODANS_2_13250	A0A090CBS5	B2B843	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2.	0.999
A0A090CBS5	PODANS_2_1860	A0A090CBS5	B2B4N3	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2.	0.994
A0A090CBS5	PODANS_2_2970	A0A090CBS5	B2B4Z0	Putative U3 small nucleolar RNA-associated protein 17.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.990
A0A090CBS5	PODANS_2_6760	A0A090CBS5	B2B654	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2.	0.414
A0A090CBS5	PODANS_2_9240	A0A090CBS5	B2B6X9	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2.	0.997
A0A090CBS5	PODANS_2_9720	A0A090CBS5	B2B730	Putative U3 small nucleolar RNA-associated protein 17.	Putative U3 small nucleolar ribonucleoprotein protein similar to IMP4 of Debaryomyces hansenii.	0.996
A0A090CBS5	PODANS_3_4970	A0A090CBS5	B2AZN0	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 3, supercontig 2.	0.912
A0A090CBS5	PODANS_5_12950	A0A090CBS5	B2AFE7	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 5, supercontig 3.	0.995
A0A090CBS5	PODANS_5_2210	A0A090CBS5	B2AEL2	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 5, supercontig 1.	0.999
A0A090CBS5	PODANS_6_3390	A0A090CBS5	B2B2E9	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 6, supercontig 2.	0.994
A0A090CBS5	PODANS_6_4910	A0A090CBS5	B2B1Z0	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 6, supercontig 2.	0.999
A0A090CBS5	PODANS_7_1410	A0A090CBS5	B2ANU6	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 7, supercontig 3.	0.535
A0A090CBS5	PODANS_7_1690	A0A090CBS5	B2AVV3	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 7, supercontig 1.	0.999
A0A090CBS5	PODANS_7_6350	A0A090CBS5	B2AW90	Putative U3 small nucleolar RNA-associated protein 17.	Podospora anserina S mat+ genomic DNA chromosome 7, supercontig 1.	0.999
A0A090CBS5	UTP25	A0A090CBS5	B2B4I8	Putative U3 small nucleolar RNA-associated protein 17.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.873