STRINGSTRING
Rmar_0477 Rmar_0477 Rmar_1157 Rmar_1157 Rmar_1164 Rmar_1164 Rmar_1165 Rmar_1165 Rmar_1166 Rmar_1166 Rmar_1167 Rmar_1167 Rmar_1168 Rmar_1168 Rmar_1169 Rmar_1169 Rmar_1170 Rmar_1170 Rmar_1386 Rmar_1386 Rmar_2148 Rmar_2148 Rmar_2164 Rmar_2164 Rmar_2215 Rmar_2215 Rmar_2512 Rmar_2512 Rmar_2731 Rmar_2731 Rmar_2780 Rmar_2780
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rmar_0477PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: vpa:VP1030 LacI family transcription regulator. (352 aa)
Rmar_1157PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bpy:Bphyt_5432 GntR domain protein. (255 aa)
Rmar_1164KEGG: dvl:Dvul_1804 membrane protein involved in aromatic hydrocarbon degradation. (465 aa)
Rmar_1165KEGG: pat:Patl_3659 poly(beta-D-mannuronate) lyase. (581 aa)
Rmar_1166PFAM: Heparinase II/III family protein; KEGG: vsp:VS_1247 hypothetical protein. (741 aa)
Rmar_1167PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmr:Mmar10_0259 short-chain dehydrogenase/reductase SDR. (252 aa)
Rmar_1168PFAM: Cupin 2 conserved barrel domain protein; KEGG: sde:Sde_3283 diguanylate cyclase/phosphodiesterase. (121 aa)
Rmar_1169PFAM: Heparinase II/III family protein; KEGG: scl:sce1001 hypothetical protein. (870 aa)
Rmar_1170PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_3106 major facilitator superfamily MFS_1. (425 aa)
Rmar_1386Hypothetical protein; KEGG: sfr:Sfri_3103 poly(beta-D-mannuronate) lyase. (966 aa)
Rmar_2148PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: mxa:MXAN_0213 transcriptional regulator, AsnC family. (167 aa)
Rmar_2164PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: mes:Meso_4531 transcriptional regulator, IclR family. (277 aa)
Rmar_2215Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein DeoR; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pen:PSEEN0174 transcriptional regulator, GntR family. (270 aa)
Rmar_2512PFAM: O-methyltransferase family 3; KEGG: rce:RC1_1081 O-methyltransferase, putative. (220 aa)
Rmar_2731PFAM: Cupin 2 conserved barrel domain protein; KEGG: sus:Acid_7472 cupin 2 domain-containing protein. (113 aa)
Rmar_2780Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: scl:sce6958 activator, hydrogen peroxide- inducible genes; Belongs to the LysR transcriptional regulatory family. (315 aa)
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.