STRINGSTRING
Rmar_1164 Rmar_1164 Rmar_1165 Rmar_1165 Rmar_1166 Rmar_1166 Rmar_1167 Rmar_1167 Rmar_1168 Rmar_1168 Rmar_1169 Rmar_1169 Rmar_1170 Rmar_1170 Rmar_1386 Rmar_1386 Rmar_2512 Rmar_2512 Rmar_2731 Rmar_2731
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rmar_1164KEGG: dvl:Dvul_1804 membrane protein involved in aromatic hydrocarbon degradation. (465 aa)
Rmar_1165KEGG: pat:Patl_3659 poly(beta-D-mannuronate) lyase. (581 aa)
Rmar_1166PFAM: Heparinase II/III family protein; KEGG: vsp:VS_1247 hypothetical protein. (741 aa)
Rmar_1167PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmr:Mmar10_0259 short-chain dehydrogenase/reductase SDR. (252 aa)
Rmar_1168PFAM: Cupin 2 conserved barrel domain protein; KEGG: sde:Sde_3283 diguanylate cyclase/phosphodiesterase. (121 aa)
Rmar_1169PFAM: Heparinase II/III family protein; KEGG: scl:sce1001 hypothetical protein. (870 aa)
Rmar_1170PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_3106 major facilitator superfamily MFS_1. (425 aa)
Rmar_1386Hypothetical protein; KEGG: sfr:Sfri_3103 poly(beta-D-mannuronate) lyase. (966 aa)
Rmar_2512PFAM: O-methyltransferase family 3; KEGG: rce:RC1_1081 O-methyltransferase, putative. (220 aa)
Rmar_2731PFAM: Cupin 2 conserved barrel domain protein; KEGG: sus:Acid_7472 cupin 2 domain-containing protein. (113 aa)
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
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