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ALC53_06565 ALC53_06565 ALC53_12847 ALC53_12847 ALC53_12523 ALC53_12523 ALC53_10277 ALC53_10277 ALC53_09875 ALC53_09875 ALC53_09168 ALC53_09168 ALC53_09131 ALC53_09131 ALC53_08735 ALC53_08735 ALC53_10096 ALC53_10096 ALC53_09164 ALC53_09164 ALC53_06704 ALC53_06704 ALC53_06712 ALC53_06712 ALC53_05837 ALC53_05837 ALC53_05688 ALC53_05688 ALC53_05614 ALC53_05614 ALC53_04233 ALC53_04233 ALC53_04283 ALC53_04283 ALC53_03734 ALC53_03734 ALC53_01881 ALC53_01881 ALC53_00750 ALC53_00750 ALC53_14099 ALC53_14099 ALC53_14240 ALC53_14240 ALC53_14177 ALC53_14177 ALC53_14161 ALC53_14161 ALC53_13733 ALC53_13733 ALC53_13619 ALC53_13619 ALC53_13504 ALC53_13504 ALC53_13279 ALC53_13279 ALC53_13302 ALC53_13302 ALC53_12996 ALC53_12996 ALC53_12787 ALC53_12787 ALC53_12781 ALC53_12781 ALC53_12432 ALC53_12432 ALC53_12122 ALC53_12122 ALC53_11837 ALC53_11837 ALC53_11856 ALC53_11856 ALC53_11590 ALC53_11590 ALC53_11554 ALC53_11554 ALC53_11875 ALC53_11875 ALC53_11545 ALC53_11545 ALC53_11068 ALC53_11068 ALC53_11161 ALC53_11161 ALC53_11226 ALC53_11226 ALC53_11223 ALC53_11223 ALC53_11222 ALC53_11222 ALC53_11215 ALC53_11215 ALC53_11144 ALC53_11144 ALC53_11247 ALC53_11247 ALC53_10305 ALC53_10305 ALC53_10165 ALC53_10165 ALC53_10159 ALC53_10159 ALC53_09932 ALC53_09932 ALC53_09849 ALC53_09849 ALC53_09517 ALC53_09517 ALC53_09805 ALC53_09805 ALC53_09355 ALC53_09355 ALC53_09407 ALC53_09407 ALC53_09031 ALC53_09031 ALC53_09071 ALC53_09071 ALC53_09052 ALC53_09052 ALC53_08823 ALC53_08823 ALC53_08417 ALC53_08417 ALC53_08160 ALC53_08160 ALC53_07726 ALC53_07726 ALC53_07800 ALC53_07800 ALC53_07911 ALC53_07911 ALC53_07957 ALC53_07957 ALC53_08039 ALC53_08039 ALC53_07775 ALC53_07775 ALC53_07376 ALC53_07376 ALC53_07803 ALC53_07803 ALC53_06927 ALC53_06927 ALC53_07100 ALC53_07100 LSM5 LSM5 ALC53_06477 ALC53_06477 ALC53_05810 ALC53_05810 LSM1 LSM1 ALC53_05391 ALC53_05391 ALC53_05393 ALC53_05393 ALC53_05469 ALC53_05469 ALC53_05482 ALC53_05482 LSM4 LSM4 ALC53_04958 ALC53_04958 ALC53_04641 ALC53_04641 ALC53_04689 ALC53_04689 ALC53_04446 ALC53_04446 ALC53_04164 ALC53_04164 ALC53_03749 ALC53_03749 ALC53_03971 ALC53_03971 ALC53_03496 ALC53_03496 LSM8 LSM8 ALC53_03225 ALC53_03225 ALC53_02960 ALC53_02960 ALC53_02963 ALC53_02963 ALC53_03104 ALC53_03104 ALC53_02369 ALC53_02369 ALC53_02947 ALC53_02947 ALC53_03133 ALC53_03133 ALC53_02984 ALC53_02984 ALC53_03004 ALC53_03004 ALC53_03017 ALC53_03017 ALC53_01907 ALC53_01907 ALC53_02624 ALC53_02624 ALC53_02680 ALC53_02680 ALC53_02532 ALC53_02532 ALC53_02132 ALC53_02132 ALC53_02159 ALC53_02159 ALC53_02597 ALC53_02597 ALC53_02213 ALC53_02213 ALC53_02253 ALC53_02253 ALC53_00942 ALC53_00942 ALC53_01055 ALC53_01055 ALC53_00641 ALC53_00641 LSM3 LSM3 ALC53_00538 ALC53_00538 ALC53_00617 ALC53_00617 ALC53_01034 ALC53_01034 ALC53_00514 ALC53_00514 ALC53_00544 ALC53_00544 ALC53_00574 ALC53_00574 ALC53_00713 ALC53_00713 ALC53_00552 ALC53_00552 ALC53_00076 ALC53_00076 ALC53_00238 ALC53_00238
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALC53_06565Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (116 aa)
ALC53_12847Pre-mRNA-splicing factor 18. (348 aa)
ALC53_12523Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family. (788 aa)
ALC53_10277Small nuclear ribonucleoprotein-associated protein. (216 aa)
ALC53_09875WD40 repeat-containing protein SMU1. (510 aa)
ALC53_09168Pre-mRNA-splicing factor SYF1. (823 aa)
ALC53_09131Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (611 aa)
ALC53_08735Serine/threonine-protein kinase PRP4 like protein. (450 aa)
ALC53_10096Uncharacterized protein. (249 aa)
ALC53_09164Cysteine string protein. (207 aa)
ALC53_06704Pre-mRNA-splicing factor ISY1 like protein. (270 aa)
ALC53_06712U4/U6 small nuclear ribonucleoprotein Prp31. (489 aa)
ALC53_05837UPF0667 protein C1orf55 like protein. (263 aa)
ALC53_05688Putative U2 small nuclear ribonucleoprotein A. (246 aa)
ALC53_05614Pre-mRNA-processing-splicing factor 8. (2372 aa)
ALC53_04233Protein BUD31 like protein. (144 aa)
ALC53_04283RNA-binding protein 40. (520 aa)
ALC53_03734Pre-mRNA-processing factor 6. (931 aa)
ALC53_01881U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
ALC53_00750Pre-mRNA-splicing factor RBM22. (425 aa)
ALC53_14099Nuclear cap-binding protein subunit 1. (832 aa)
ALC53_14240Cell division cycle 5-related protein. (785 aa)
ALC53_14177Protein Red. (589 aa)
ALC53_14161Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (165 aa)
ALC53_13733Splicing factor 3B subunit 1. (1323 aa)
ALC53_13619U5 small nuclear ribonucleoprotein 40 kDa protein. (349 aa)
ALC53_13504Serine/arginine repetitive matrix protein 2. (1081 aa)
ALC53_13279Splicing factor 3A subunit 2. (274 aa)
ALC53_13302tRNA selenocysteine 1-associated protein 1. (295 aa)
ALC53_12996Peptidyl-prolyl cis-trans isomerase-like 2. (520 aa)
ALC53_12787Leucine-rich repeat-containing protein 51. (201 aa)
ALC53_12781Tr-type G domain-containing protein. (981 aa)
ALC53_12432Splicing factor 1. (620 aa)
ALC53_12122Leucine-rich repeat-containing protein C10orf11 like protein. (562 aa)
ALC53_11837PHD finger-like domain-containing protein 5A. (110 aa)
ALC53_11856Putative RNA-binding protein Luc7-like 1. (364 aa)
ALC53_11590RNA-binding protein 25. (848 aa)
ALC53_11554Uncharacterized protein. (427 aa)
ALC53_11875Protein FAM32A. (114 aa)
ALC53_11545Transcription elongation regulator 1. (1124 aa)
ALC53_11068Splicing factor 3A subunit 1. (768 aa)
ALC53_11161U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
ALC53_11226Peroxisome proliferator-activated receptor gamma coactivator-related protein 1. (873 aa)
ALC53_11223Transferrin. (724 aa)
ALC53_11222Splicing factor 3A subunit 3. (500 aa)
ALC53_11215WD repeat-containing protein 69. (408 aa)
ALC53_11144Pre-mRNA-processing factor 17. (563 aa)
ALC53_11247PRKR-interacting protein 1 like protein. (222 aa)
ALC53_10305Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (921 aa)
ALC53_10165Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (399 aa)
ALC53_10159Splicing factor 3B subunit 3. (1235 aa)
ALC53_09932Splicing factor 3B subunit 4. (411 aa)
ALC53_09849U7 snRNA-associated Sm-like protein LSm10. (99 aa)
ALC53_09517Pre-mRNA-processing factor 39. (1064 aa)
ALC53_09805Pre-mRNA-processing factor 6. (444 aa)
ALC53_09355Coiled-coil domain-containing protein 12. (146 aa)
ALC53_09407CDK5RAP1-like protein. (1387 aa)
ALC53_09031Uncharacterized protein. (2749 aa)
ALC53_09071Pre-mRNA-processing factor 19. (503 aa)
ALC53_09052Zinc finger matrin-type protein 2. (197 aa)
ALC53_08823Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (719 aa)
ALC53_08417Smad nuclear interacting protein 1. (298 aa)
ALC53_08160Tudor domain-containing protein 12. (780 aa)
ALC53_07726U2 small nuclear ribonucleoprotein B. (184 aa)
ALC53_07800Pre-mRNA-splicing factor SPF27. (244 aa)
ALC53_07911Tuftelin-interacting protein 11. (826 aa)
ALC53_07957Phosphorylated adapter RNA export protein. (384 aa)
ALC53_08039Transferrin. (608 aa)
ALC53_07775U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (214 aa)
ALC53_07376Beta-catenin-like protein 1. (600 aa)
ALC53_07803Splicing factor 3B subunit 2. (751 aa)
ALC53_06927U4/U6.U5 tri-snRNP-associated protein 2. (507 aa)
ALC53_07100Uncharacterized protein. (639 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
ALC53_06477Pre-mRNA-splicing factor 38A. (307 aa)
ALC53_05810Uncharacterized protein. (2100 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (138 aa)
ALC53_05391BUD13 like protein. (563 aa)
ALC53_05393Zinc finger matrin-type protein 5. (165 aa)
ALC53_05469Pre-mRNA-splicing factor Syf2. (232 aa)
ALC53_05482Putative ATP-dependent RNA helicase DDX46. (1030 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
ALC53_04958Serine/threonine-protein phosphatase 1 regulatory subunit 10. (1149 aa)
ALC53_04641U6 snRNA-associated Sm-like protein LSm7. (117 aa)
ALC53_04689U4/U6.U5 tri-snRNP-associated protein 1. (738 aa)
ALC53_04446Protein CWC15 like protein A. (225 aa)
ALC53_04164WW domain-binding protein 4. (590 aa)
ALC53_03749U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (409 aa)
ALC53_03971Uncharacterized protein. (171 aa)
ALC53_03496Pre-mRNA-splicing factor CWC22 like protein. (739 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (82 aa)
ALC53_03225Squamous cell carcinoma antigen recognized by T-cells 3. (902 aa)
ALC53_02960Microfibrillar-associated protein 1. (456 aa)
ALC53_02963ATP-dependent RNA helicase DHX8. (1164 aa)
ALC53_03104U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (106 aa)
ALC53_02369Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1132 aa)
ALC53_02947U4/U6 small nuclear ribonucleoprotein Prp4. (523 aa)
ALC53_03133Pre-mRNA-splicing factor CWC25 like protein. (811 aa)
ALC53_02984U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (176 aa)
ALC53_03004Serrate RNA effector molecule like protein. (922 aa)
ALC53_03017Protein PAT1 like protein 1. (728 aa)
ALC53_01907Coiled-coil domain-containing protein 94. (356 aa)
ALC53_02624ATP-dependent RNA helicase vasa, isoform A; Belongs to the DEAD box helicase family. (786 aa)
ALC53_02680Small nuclear ribonucleoprotein G. (64 aa)
ALC53_02532Pre-mRNA-splicing factor CWC22 like protein. (456 aa)
ALC53_02132Gastrulation defective protein 1 like protein. (659 aa)
ALC53_02159Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (172 aa)
ALC53_02597U4/U6 small nuclear ribonucleoprotein Prp3. (1271 aa)
ALC53_02213Puff-specific protein Bx42. (545 aa)
ALC53_02253Pre-mRNA branch site p14-like protein. (125 aa)
ALC53_00942Protein crooked neck. (672 aa)
ALC53_01055Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
ALC53_00641Peptidyl-prolyl cis-trans isomerase E. (289 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (67 aa)
ALC53_00538Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (219 aa)
ALC53_00617Small nuclear ribonucleoprotein Sm D3. (142 aa)
ALC53_01034Uncharacterized protein. (196 aa)
ALC53_00514Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (184 aa)
ALC53_00544Intron-binding protein aquarius. (1351 aa)
ALC53_00574Pleiotropic regulator 1. (454 aa)
ALC53_00713U6 snRNA-associated Sm-like protein LSm2. (96 aa)
ALC53_00552Nucleolar protein of 40 kDa. (258 aa)
ALC53_00076Peptidyl-prolyl cis-trans isomerase CWC27 like protein. (1496 aa)
ALC53_00238Uncharacterized protein. (880 aa)
Your Current Organism:
Atta colombica
NCBI taxonomy Id: 520822
Other names: A. colombica
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