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ALC53_06565 ALC53_06565 ALC53_12523 ALC53_12523 ALC53_10277 ALC53_10277 ALC53_09875 ALC53_09875 ALC53_08735 ALC53_08735 ALC53_10096 ALC53_10096 ALC53_06712 ALC53_06712 ALC53_05688 ALC53_05688 ALC53_05614 ALC53_05614 ALC53_04283 ALC53_04283 ALC53_03734 ALC53_03734 ALC53_01881 ALC53_01881 ALC53_14177 ALC53_14177 ALC53_13733 ALC53_13733 ALC53_13619 ALC53_13619 ALC53_13279 ALC53_13279 ALC53_12787 ALC53_12787 ALC53_12781 ALC53_12781 ALC53_12122 ALC53_12122 ALC53_11837 ALC53_11837 ALC53_11545 ALC53_11545 ALC53_11068 ALC53_11068 ALC53_11161 ALC53_11161 ALC53_11223 ALC53_11223 ALC53_11222 ALC53_11222 ALC53_11215 ALC53_11215 ALC53_10159 ALC53_10159 ALC53_09932 ALC53_09932 ALC53_09849 ALC53_09849 ALC53_09805 ALC53_09805 ALC53_09052 ALC53_09052 ALC53_07726 ALC53_07726 ALC53_07803 ALC53_07803 ALC53_06927 ALC53_06927 ALC53_07100 ALC53_07100 LSM5 LSM5 ALC53_06477 ALC53_06477 ALC53_05810 ALC53_05810 LSM1 LSM1 ALC53_05393 ALC53_05393 ALC53_05482 ALC53_05482 LSM4 LSM4 ALC53_04641 ALC53_04641 ALC53_04689 ALC53_04689 ALC53_04164 ALC53_04164 LSM8 LSM8 ALC53_03225 ALC53_03225 ALC53_02960 ALC53_02960 ALC53_03104 ALC53_03104 ALC53_02947 ALC53_02947 ALC53_02984 ALC53_02984 ALC53_03017 ALC53_03017 ALC53_02624 ALC53_02624 ALC53_02680 ALC53_02680 ALC53_02597 ALC53_02597 ALC53_02253 ALC53_02253 ALC53_01055 ALC53_01055 LSM3 LSM3 ALC53_00617 ALC53_00617 ALC53_00514 ALC53_00514 ALC53_00713 ALC53_00713
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALC53_06565Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (116 aa)
ALC53_12523Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family. (788 aa)
ALC53_10277Small nuclear ribonucleoprotein-associated protein. (216 aa)
ALC53_09875WD40 repeat-containing protein SMU1. (510 aa)
ALC53_08735Serine/threonine-protein kinase PRP4 like protein. (450 aa)
ALC53_10096Uncharacterized protein. (249 aa)
ALC53_06712U4/U6 small nuclear ribonucleoprotein Prp31. (489 aa)
ALC53_05688Putative U2 small nuclear ribonucleoprotein A. (246 aa)
ALC53_05614Pre-mRNA-processing-splicing factor 8. (2372 aa)
ALC53_04283RNA-binding protein 40. (520 aa)
ALC53_03734Pre-mRNA-processing factor 6. (931 aa)
ALC53_01881U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
ALC53_14177Protein Red. (589 aa)
ALC53_13733Splicing factor 3B subunit 1. (1323 aa)
ALC53_13619U5 small nuclear ribonucleoprotein 40 kDa protein. (349 aa)
ALC53_13279Splicing factor 3A subunit 2. (274 aa)
ALC53_12787Leucine-rich repeat-containing protein 51. (201 aa)
ALC53_12781Tr-type G domain-containing protein. (981 aa)
ALC53_12122Leucine-rich repeat-containing protein C10orf11 like protein. (562 aa)
ALC53_11837PHD finger-like domain-containing protein 5A. (110 aa)
ALC53_11545Transcription elongation regulator 1. (1124 aa)
ALC53_11068Splicing factor 3A subunit 1. (768 aa)
ALC53_11161U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
ALC53_11223Transferrin. (724 aa)
ALC53_11222Splicing factor 3A subunit 3. (500 aa)
ALC53_11215WD repeat-containing protein 69. (408 aa)
ALC53_10159Splicing factor 3B subunit 3. (1235 aa)
ALC53_09932Splicing factor 3B subunit 4. (411 aa)
ALC53_09849U7 snRNA-associated Sm-like protein LSm10. (99 aa)
ALC53_09805Pre-mRNA-processing factor 6. (444 aa)
ALC53_09052Zinc finger matrin-type protein 2. (197 aa)
ALC53_07726U2 small nuclear ribonucleoprotein B. (184 aa)
ALC53_07803Splicing factor 3B subunit 2. (751 aa)
ALC53_06927U4/U6.U5 tri-snRNP-associated protein 2. (507 aa)
ALC53_07100Uncharacterized protein. (639 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
ALC53_06477Pre-mRNA-splicing factor 38A. (307 aa)
ALC53_05810Uncharacterized protein. (2100 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (138 aa)
ALC53_05393Zinc finger matrin-type protein 5. (165 aa)
ALC53_05482Putative ATP-dependent RNA helicase DDX46. (1030 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
ALC53_04641U6 snRNA-associated Sm-like protein LSm7. (117 aa)
ALC53_04689U4/U6.U5 tri-snRNP-associated protein 1. (738 aa)
ALC53_04164WW domain-binding protein 4. (590 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (82 aa)
ALC53_03225Squamous cell carcinoma antigen recognized by T-cells 3. (902 aa)
ALC53_02960Microfibrillar-associated protein 1. (456 aa)
ALC53_03104U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (106 aa)
ALC53_02947U4/U6 small nuclear ribonucleoprotein Prp4. (523 aa)
ALC53_02984U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (176 aa)
ALC53_03017Protein PAT1 like protein 1. (728 aa)
ALC53_02624ATP-dependent RNA helicase vasa, isoform A; Belongs to the DEAD box helicase family. (786 aa)
ALC53_02680Small nuclear ribonucleoprotein G. (64 aa)
ALC53_02597U4/U6 small nuclear ribonucleoprotein Prp3. (1271 aa)
ALC53_02253Pre-mRNA branch site p14-like protein. (125 aa)
ALC53_01055Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (67 aa)
ALC53_00617Small nuclear ribonucleoprotein Sm D3. (142 aa)
ALC53_00514Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (184 aa)
ALC53_00713U6 snRNA-associated Sm-like protein LSm2. (96 aa)
Your Current Organism:
Atta colombica
NCBI taxonomy Id: 520822
Other names: A. colombica
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