STRINGSTRING
ALC53_06565 ALC53_06565 ALC53_10277 ALC53_10277 ALC53_05688 ALC53_05688 ALC53_01881 ALC53_01881 ALC53_13733 ALC53_13733 ALC53_13279 ALC53_13279 ALC53_11837 ALC53_11837 ALC53_11068 ALC53_11068 ALC53_11161 ALC53_11161 ALC53_11222 ALC53_11222 ALC53_10159 ALC53_10159 ALC53_09932 ALC53_09932 ALC53_07726 ALC53_07726 ALC53_07803 ALC53_07803 ALC53_07100 ALC53_07100 ALC53_05482 ALC53_05482 ALC53_02680 ALC53_02680 ALC53_02253 ALC53_02253 ALC53_00617 ALC53_00617
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALC53_06565Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (116 aa)
ALC53_10277Small nuclear ribonucleoprotein-associated protein. (216 aa)
ALC53_05688Putative U2 small nuclear ribonucleoprotein A. (246 aa)
ALC53_01881U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
ALC53_13733Splicing factor 3B subunit 1. (1323 aa)
ALC53_13279Splicing factor 3A subunit 2. (274 aa)
ALC53_11837PHD finger-like domain-containing protein 5A. (110 aa)
ALC53_11068Splicing factor 3A subunit 1. (768 aa)
ALC53_11161U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
ALC53_11222Splicing factor 3A subunit 3. (500 aa)
ALC53_10159Splicing factor 3B subunit 3. (1235 aa)
ALC53_09932Splicing factor 3B subunit 4. (411 aa)
ALC53_07726U2 small nuclear ribonucleoprotein B. (184 aa)
ALC53_07803Splicing factor 3B subunit 2. (751 aa)
ALC53_07100Uncharacterized protein. (639 aa)
ALC53_05482Putative ATP-dependent RNA helicase DDX46. (1030 aa)
ALC53_02680Small nuclear ribonucleoprotein G. (64 aa)
ALC53_02253Pre-mRNA branch site p14-like protein. (125 aa)
ALC53_00617Small nuclear ribonucleoprotein Sm D3. (142 aa)
Your Current Organism:
Atta colombica
NCBI taxonomy Id: 520822
Other names: A. colombica
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