STRINGSTRING
ALC53_02253 ALC53_02253 ALC53_00260 ALC53_00260 ALC53_00076 ALC53_00076 ALC53_00713 ALC53_00713 ALC53_00574 ALC53_00574 ALC53_00544 ALC53_00544 ALC53_00514 ALC53_00514 ALC53_01080 ALC53_01080 ALC53_00489 ALC53_00489 ALC53_01034 ALC53_01034 ALC53_00330 ALC53_00330 ALC53_00617 ALC53_00617 ALC53_00568 ALC53_00568 LSM3 LSM3 ALC53_00641 ALC53_00641 ALC53_01055 ALC53_01055 ALC53_00942 ALC53_00942 ALC53_01552 ALC53_01552 ALC53_00817 ALC53_00817 ALC53_01455 ALC53_01455 ALC53_01721 ALC53_01721 ALC53_02213 ALC53_02213 ALC53_02101 ALC53_02101 ALC53_01723 ALC53_01723 ALC53_02436 ALC53_02436 ALC53_02597 ALC53_02597 ALC53_02159 ALC53_02159 ALC53_02680 ALC53_02680 ALC53_02594 ALC53_02594 ALC53_02984 ALC53_02984 ALC53_02947 ALC53_02947 ALC53_02369 ALC53_02369 ALC53_02966 ALC53_02966 ALC53_02593 ALC53_02593 ALC53_03104 ALC53_03104 ALC53_02725 ALC53_02725 ALC53_03111 ALC53_03111 ALC53_03413 ALC53_03413 ALC53_02963 ALC53_02963 ALC53_03510 ALC53_03510 ALC53_03646 ALC53_03646 LSM8 LSM8 ALC53_04751 ALC53_04751 ALC53_04896 ALC53_04896 ALC53_04833 ALC53_04833 ALC53_04446 ALC53_04446 ALC53_04689 ALC53_04689 ALC53_04641 ALC53_04641 ALC53_05341 ALC53_05341 ALC53_05303 ALC53_05303 ALC53_05298 ALC53_05298 LSM4 LSM4 ALC53_04884 ALC53_04884 ALC53_04844 ALC53_04844 ALC53_05372 ALC53_05372 ALC53_05555 ALC53_05555 ALC53_05482 ALC53_05482 ALC53_05469 ALC53_05469 ALC53_05299 ALC53_05299 ALC53_05451 ALC53_05451 ALC53_05393 ALC53_05393 ALC53_05968 ALC53_05968 ALC53_06085 ALC53_06085 ALC53_13619 ALC53_13619 ALC53_13488 ALC53_13488 ALC53_13583 ALC53_13583 ALC53_13531 ALC53_13531 ALC53_13490 ALC53_13490 ALC53_13375 ALC53_13375 ALC53_13279 ALC53_13279 ALC53_13326 ALC53_13326 ALC53_12787 ALC53_12787 ALC53_12781 ALC53_12781 ALC53_12703 ALC53_12703 ALC53_12424 ALC53_12424 ALC53_12350 ALC53_12350 ALC53_11837 ALC53_11837 ALC53_11843 ALC53_11843 ALC53_11515 ALC53_11515 ALC53_11590 ALC53_11590 ALC53_11554 ALC53_11554 ALC53_11870 ALC53_11870 ALC53_11890 ALC53_11890 ALC53_11403 ALC53_11403 ALC53_11545 ALC53_11545 ALC53_11068 ALC53_11068 ALC53_11161 ALC53_11161 ALC53_11226 ALC53_11226 ALC53_11222 ALC53_11222 ALC53_11215 ALC53_11215 ALC53_11144 ALC53_11144 ALC53_10555 ALC53_10555 ALC53_10597 ALC53_10597 ALC53_10305 ALC53_10305 ALC53_10159 ALC53_10159 ALC53_10145 ALC53_10145 ALC53_09932 ALC53_09932 ALC53_09849 ALC53_09849 ALC53_09805 ALC53_09805 ALC53_09355 ALC53_09355 ALC53_09407 ALC53_09407 ALC53_09233 ALC53_09233 ALC53_09031 ALC53_09031 ALC53_09263 ALC53_09263 ALC53_09078 ALC53_09078 ALC53_09071 ALC53_09071 ALC53_09383 ALC53_09383 ALC53_09052 ALC53_09052 ALC53_08823 ALC53_08823 ALC53_08475 ALC53_08475 ALC53_08478 ALC53_08478 ALC53_08125 ALC53_08125 ALC53_08160 ALC53_08160 ALC53_07726 ALC53_07726 ALC53_07780 ALC53_07780 ALC53_07800 ALC53_07800 ALC53_07984 ALC53_07984 ALC53_07723 ALC53_07723 ALC53_07775 ALC53_07775 ALC53_05810 ALC53_05810 ALC53_06477 ALC53_06477 ALC53_05970 ALC53_05970 LSM5 LSM5 ALC53_06626 ALC53_06626 ALC53_06205 ALC53_06205 ALC53_06794 ALC53_06794 ALC53_07100 ALC53_07100 ALC53_07036 ALC53_07036 ALC53_06586 ALC53_06586 ALC53_07267 ALC53_07267 ALC53_06927 ALC53_06927 ALC53_07651 ALC53_07651 ALC53_07803 ALC53_07803 ALC53_07391 ALC53_07391 ALC53_07806 ALC53_07806 ALC53_07376 ALC53_07376 ALC53_12828 ALC53_12828 ALC53_06565 ALC53_06565 ALC53_12847 ALC53_12847 ALC53_12523 ALC53_12523 ALC53_12803 ALC53_12803 ALC53_11434 ALC53_11434 ALC53_10684 ALC53_10684 ALC53_10473 ALC53_10473 ALC53_10209 ALC53_10209 ALC53_10277 ALC53_10277 ALC53_09168 ALC53_09168 ALC53_09141 ALC53_09141 ALC53_09138 ALC53_09138 ALC53_10096 ALC53_10096 ALC53_08728 ALC53_08728 ALC53_07507 ALC53_07507 ALC53_08233 ALC53_08233 ALC53_06704 ALC53_06704 ALC53_06712 ALC53_06712 ALC53_06709 ALC53_06709 ALC53_05829 ALC53_05829 ALC53_05688 ALC53_05688 ALC53_05846 ALC53_05846 ALC53_05614 ALC53_05614 ALC53_05619 ALC53_05619 ALC53_04233 ALC53_04233 ALC53_04283 ALC53_04283 ALC53_03734 ALC53_03734 ALC53_01881 ALC53_01881 ALC53_00758 ALC53_00758 ALC53_00750 ALC53_00750 ALC53_14099 ALC53_14099 ALC53_14240 ALC53_14240 ALC53_14161 ALC53_14161 ALC53_13806 ALC53_13806 ALC53_13733 ALC53_13733
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALC53_02253Pre-mRNA branch site p14-like protein. (125 aa)
ALC53_00260WW domain-binding protein 11. (561 aa)
ALC53_00076Peptidyl-prolyl cis-trans isomerase CWC27 like protein. (1496 aa)
ALC53_00713U6 snRNA-associated Sm-like protein LSm2. (96 aa)
ALC53_00574Pleiotropic regulator 1. (454 aa)
ALC53_00544Intron-binding protein aquarius. (1351 aa)
ALC53_00514Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (184 aa)
ALC53_01080Pre-mRNA-splicing factor 38B. (434 aa)
ALC53_00489G patch domain-containing protein 2. (502 aa)
ALC53_01034Uncharacterized protein. (196 aa)
ALC53_00330Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (712 aa)
ALC53_00617Small nuclear ribonucleoprotein Sm D3. (142 aa)
ALC53_00568Zinc transporter 7. (359 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (67 aa)
ALC53_00641Peptidyl-prolyl cis-trans isomerase E. (289 aa)
ALC53_01055Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
ALC53_00942Protein crooked neck. (672 aa)
ALC53_01552UHRF1-binding protein 1-like protein. (1430 aa)
ALC53_00817Myelin expression factor 2. (730 aa)
ALC53_01455RNA-binding protein Rsf1. (197 aa)
ALC53_01721RNA-binding protein 38. (518 aa)
ALC53_02213Puff-specific protein Bx42. (545 aa)
ALC53_02101Uncharacterized protein. (161 aa)
ALC53_01723Uncharacterized protein. (397 aa)
ALC53_02436Protein TAPT1 like protein. (560 aa)
ALC53_02597U4/U6 small nuclear ribonucleoprotein Prp3. (1271 aa)
ALC53_02159Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (172 aa)
ALC53_02680Small nuclear ribonucleoprotein G. (64 aa)
ALC53_02594Nucleolysin TIA-1 isoform p40. (542 aa)
ALC53_02984U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (176 aa)
ALC53_02947U4/U6 small nuclear ribonucleoprotein Prp4. (523 aa)
ALC53_02369Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1132 aa)
ALC53_02966HSac2 domain-containing protein. (488 aa)
ALC53_02593Uncharacterized protein. (193 aa)
ALC53_03104U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (106 aa)
ALC53_02725Lethal(3)malignant brain tumor-like protein 3. (1393 aa)
ALC53_03111Polyglutamine-binding protein 1. (313 aa)
ALC53_03413THO complex subunit 1. (652 aa)
ALC53_02963ATP-dependent RNA helicase DHX8. (1164 aa)
ALC53_03510SDP_N domain-containing protein. (284 aa)
ALC53_03646ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family. (768 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (82 aa)
ALC53_04751Uncharacterized protein. (802 aa)
ALC53_04896ATP-dependent RNA helicase WM6. (471 aa)
ALC53_04833Survival of motor neuron-related-splicing factor 30. (235 aa)
ALC53_04446Protein CWC15 like protein A. (225 aa)
ALC53_04689U4/U6.U5 tri-snRNP-associated protein 1. (738 aa)
ALC53_04641U6 snRNA-associated Sm-like protein LSm7. (117 aa)
ALC53_05341WW domain-containing adapter protein with coiled-coil. (646 aa)
ALC53_05303Uncharacterized protein. (314 aa)
ALC53_05298Uncharacterized protein. (229 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
ALC53_04884Protein germ cell-less. (480 aa)
ALC53_04844Uncharacterized protein. (710 aa)
ALC53_05372Uncharacterized protein. (1233 aa)
ALC53_05555SRA stem-loop-interacting RNA-binding protein, mitochondrial. (84 aa)
ALC53_05482Putative ATP-dependent RNA helicase DDX46. (1030 aa)
ALC53_05469Pre-mRNA-splicing factor Syf2. (232 aa)
ALC53_05299Heat shock 70 kDa protein cognate 4. (88 aa)
ALC53_05451Apoptotic chromatin condensation inducer in the nucleus. (831 aa)
ALC53_05393Zinc finger matrin-type protein 5. (165 aa)
ALC53_05968U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1. (476 aa)
ALC53_06085Putative ATP-dependent RNA helicase Dbp73D. (785 aa)
ALC53_13619U5 small nuclear ribonucleoprotein 40 kDa protein. (349 aa)
ALC53_13488C2H2-type domain-containing protein. (295 aa)
ALC53_13583RNA-binding protein 1. (347 aa)
ALC53_13531Uncharacterized protein. (424 aa)
ALC53_13490Heterogeneous nuclear ribonucleoprotein C. (142 aa)
ALC53_13375Transformer-2 sex-determining protein. (406 aa)
ALC53_13279Splicing factor 3A subunit 2. (274 aa)
ALC53_13326Heat shock 70 kDa protein cognate 4; Belongs to the heat shock protein 70 family. (651 aa)
ALC53_12787Leucine-rich repeat-containing protein 51. (201 aa)
ALC53_12781Tr-type G domain-containing protein. (981 aa)
ALC53_12703Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (242 aa)
ALC53_12424La-related protein 7. (834 aa)
ALC53_12350Splicing factor U2af 38 kDa subunit. (240 aa)
ALC53_11837PHD finger-like domain-containing protein 5A. (110 aa)
ALC53_11843Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (741 aa)
ALC53_11515Zinc finger CCCH domain-containing protein 13. (1392 aa)
ALC53_11590RNA-binding protein 25. (848 aa)
ALC53_11554Uncharacterized protein. (427 aa)
ALC53_11870BTB/POZ domain-containing protein 9. (630 aa)
ALC53_11890Transcriptional adapter 1. (317 aa)
ALC53_11403Uncharacterized protein. (696 aa)
ALC53_11545Transcription elongation regulator 1. (1124 aa)
ALC53_11068Splicing factor 3A subunit 1. (768 aa)
ALC53_11161U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (175 aa)
ALC53_11226Peroxisome proliferator-activated receptor gamma coactivator-related protein 1. (873 aa)
ALC53_11222Splicing factor 3A subunit 3. (500 aa)
ALC53_11215WD repeat-containing protein 69. (408 aa)
ALC53_11144Pre-mRNA-processing factor 17. (563 aa)
ALC53_10555BTB/POZ domain-containing protein 9. (480 aa)
ALC53_10597LSM domain-containing protein 1-A. (106 aa)
ALC53_10305Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (921 aa)
ALC53_10159Splicing factor 3B subunit 3. (1235 aa)
ALC53_10145RNA-binding protein 5. (942 aa)
ALC53_09932Splicing factor 3B subunit 4. (411 aa)
ALC53_09849U7 snRNA-associated Sm-like protein LSm10. (99 aa)
ALC53_09805Pre-mRNA-processing factor 6. (444 aa)
ALC53_09355Coiled-coil domain-containing protein 12. (146 aa)
ALC53_09407CDK5RAP1-like protein. (1387 aa)
ALC53_09233Heat shock 70 kDa protein cognate 4. (286 aa)
ALC53_09031Uncharacterized protein. (2749 aa)
ALC53_09263Uncharacterized protein. (985 aa)
ALC53_09078THO complex subunit 3. (322 aa)
ALC53_09071Pre-mRNA-processing factor 19. (503 aa)
ALC53_09383CS domain-containing protein. (157 aa)
ALC53_09052Zinc finger matrin-type protein 2. (197 aa)
ALC53_08823Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (719 aa)
ALC53_08475RNA and export factor-binding protein 2. (252 aa)
ALC53_08478Uncharacterized protein. (708 aa)
ALC53_08125Splicing factor U2af 38 kDa subunit. (260 aa)
ALC53_08160Tudor domain-containing protein 12. (780 aa)
ALC53_07726U2 small nuclear ribonucleoprotein B. (184 aa)
ALC53_07780Poly(U)-binding-splicing factor half pint. (593 aa)
ALC53_07800Pre-mRNA-splicing factor SPF27. (244 aa)
ALC53_07984Growth inhibition and differentiation-related protein 88 like protein. (610 aa)
ALC53_07723Splicing factor 45. (382 aa)
ALC53_07775U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein. (214 aa)
ALC53_05810Uncharacterized protein. (2100 aa)
ALC53_06477Pre-mRNA-splicing factor 38A. (307 aa)
ALC53_05970U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (301 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
ALC53_06626RNA-binding protein EWS. (464 aa)
ALC53_06205THO complex subunit 2. (1378 aa)
ALC53_06794Serine/arginine-rich splicing factor 1. (248 aa)
ALC53_07100Uncharacterized protein. (639 aa)
ALC53_07036Protein mago nashi. (146 aa)
ALC53_06586Ankyrin repeat domain-containing protein 50. (1551 aa)
ALC53_07267U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (454 aa)
ALC53_06927U4/U6.U5 tri-snRNP-associated protein 2. (507 aa)
ALC53_07651Uncharacterized protein. (311 aa)
ALC53_07803Splicing factor 3B subunit 2. (751 aa)
ALC53_07391Serine-arginine protein 55. (694 aa)
ALC53_07806Eukaryotic initiation factor 4A-III. (357 aa)
ALC53_07376Beta-catenin-like protein 1. (600 aa)
ALC53_12828SAFB-like transcription modulator. (924 aa)
ALC53_06565Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (116 aa)
ALC53_12847Pre-mRNA-splicing factor 18. (348 aa)
ALC53_12523Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family. (788 aa)
ALC53_12803Putative ATP-dependent RNA helicase DHX35. (664 aa)
ALC53_11434Serine/arginine-rich splicing factor 7. (209 aa)
ALC53_10684RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (157 aa)
ALC53_10473Calcium homeostasis endoplasmic reticulum protein. (813 aa)
ALC53_10209Serine/arginine-rich splicing factor 2. (175 aa)
ALC53_10277Small nuclear ribonucleoprotein-associated protein. (216 aa)
ALC53_09168Pre-mRNA-splicing factor SYF1. (823 aa)
ALC53_09141Heterogeneous nuclear ribonucleoprotein K. (245 aa)
ALC53_09138Heterogeneous nuclear ribonucleoprotein K. (307 aa)
ALC53_10096Uncharacterized protein. (249 aa)
ALC53_08728Angiogenic factor with G patch and FHA domains 1. (512 aa)
ALC53_07507Microtubule-associated protein RP/EB family member 1. (346 aa)
ALC53_08233Putative ATP-dependent RNA helicase DDX5. (1199 aa)
ALC53_06704Pre-mRNA-splicing factor ISY1 like protein. (270 aa)
ALC53_06712U4/U6 small nuclear ribonucleoprotein Prp31. (489 aa)
ALC53_06709Heterogeneous nuclear ribonucleoprotein A1, A2/B1 like protein. (505 aa)
ALC53_05829LYR motif-containing protein 7. (106 aa)
ALC53_05688Putative U2 small nuclear ribonucleoprotein A. (246 aa)
ALC53_05846RING-type domain-containing protein. (811 aa)
ALC53_05614Pre-mRNA-processing-splicing factor 8. (2372 aa)
ALC53_05619Protein lingerer. (1134 aa)
ALC53_04233Protein BUD31 like protein. (144 aa)
ALC53_04283RNA-binding protein 40. (520 aa)
ALC53_03734Pre-mRNA-processing factor 6. (931 aa)
ALC53_01881U1 small nuclear ribonucleoprotein 70 kDa. (405 aa)
ALC53_00758Nucleolysin TIAR. (393 aa)
ALC53_00750Pre-mRNA-splicing factor RBM22. (425 aa)
ALC53_14099Nuclear cap-binding protein subunit 1. (832 aa)
ALC53_14240Cell division cycle 5-related protein. (785 aa)
ALC53_14161Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (165 aa)
ALC53_13806Heat shock 70 kDa protein cognate 4; Belongs to the heat shock protein 70 family. (643 aa)
ALC53_13733Splicing factor 3B subunit 1. (1323 aa)
Your Current Organism:
Atta colombica
NCBI taxonomy Id: 520822
Other names: A. colombica
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