STRINGSTRING
Tpau_3102 Tpau_3102 rbsA rbsA Tpau_3554 Tpau_3554 Tpau_3555 Tpau_3555 Tpau_3556 Tpau_3556 Tpau_3557 Tpau_3557 Tpau_3558 Tpau_3558 Tpau_3559 Tpau_3559 Tpau_4210 Tpau_4210 Tpau_4211 Tpau_4211 Tpau_4212 Tpau_4212
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tpau_3102PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pjd:Pjdr2_5327 periplasmic binding protein/LacI transcriptional regulator. (326 aa)
rbsAABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (511 aa)
Tpau_3554KEGG: msm:MSMEG_6800 putative fructose transport system kinase. (205 aa)
Tpau_3555PFAM: PfkB domain protein; KEGG: msm:MSMEG_6801 kinase, PfkB family protein. (284 aa)
Tpau_3556KEGG: msm:MSMEG_6802 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (260 aa)
Tpau_3557PFAM: inner-membrane translocator; KEGG: msm:MSMEG_6803 ribose transport system permease protein RbsC. (329 aa)
Tpau_3558PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: msm:MSMEG_6804 sugar ABC transporter substrate-binding protein. (336 aa)
Tpau_3559Transcriptional regulator, LacI family; KEGG: msm:MSMEG_6798 ribose operon repressor; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI. (339 aa)
Tpau_4210PFAM: inner-membrane translocator; KEGG: rsh:Rsph17029_3438 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (415 aa)
Tpau_4211ABC transporter related protein; KEGG: tfu:Tfu_1921 ABC-type sugar transport system ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase. (276 aa)
Tpau_4212KEGG: tfu:Tfu_1922 solute-binding protein. (366 aa)
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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