STRINGSTRING
Tpau_1358 Tpau_1358 Tpau_3061 Tpau_3061 Tpau_3102 Tpau_3102 Tpau_3558 Tpau_3558 Tpau_3559 Tpau_3559 Tpau_4212 Tpau_4212
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tpau_1358KEGG: rop:ROP_05200 putative ABC transporter substrate-binding protein. (337 aa)
Tpau_3061KEGG: sen:SACE_4439 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI. (323 aa)
Tpau_3102PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pjd:Pjdr2_5327 periplasmic binding protein/LacI transcriptional regulator. (326 aa)
Tpau_3558PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: msm:MSMEG_6804 sugar ABC transporter substrate-binding protein. (336 aa)
Tpau_3559Transcriptional regulator, LacI family; KEGG: msm:MSMEG_6798 ribose operon repressor; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI. (339 aa)
Tpau_4212KEGG: tfu:Tfu_1922 solute-binding protein. (366 aa)
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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