STRINGSTRING
Athe_0508 Athe_0508 Athe_0509 Athe_0509 Athe_0513 Athe_0513 Athe_0514 Athe_0514 Athe_0516 Athe_0516 Athe_0517 Athe_0517
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Athe_0508Spore coat assembly protein SafA; KEGG: csc:Csac_1150 allergen V5/TPX-1 family protein; TIGRFAM: spore coat assembly protein SafA; PFAM: SCP-like extracellular; Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM. (203 aa)
Athe_05094Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (57 aa)
Athe_0513PFAM: protein of unknown function DUF970; nitrogen regulatory protein P-II; KEGG: csc:Csac_0741 hypothetical protein. (109 aa)
Athe_0514PFAM: protein of unknown function DUF327; KEGG: csc:Csac_0742 hypothetical protein. (148 aa)
Athe_0516PFAM: PSP1 domain protein; KEGG: csc:Csac_0744 PSP1 domain-containing protein. (295 aa)
Athe_0517PFAM: protein of unknown function DUF195; KEGG: csc:Csac_0745 hypothetical protein. (412 aa)
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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