STRINGSTRING
Athe_0217 Athe_0217 Athe_0218 Athe_0218 Athe_0628 Athe_0628 Athe_0646 Athe_0646 Athe_0736 Athe_0736 Athe_0784 Athe_0784 Athe_0787 Athe_0787 Athe_0788 Athe_0788 Athe_1006 Athe_1006 Athe_1336 Athe_1336 Athe_1337 Athe_1337 Athe_1789 Athe_1789 gpr gpr Athe_1953 Athe_1953 Athe_2601 Athe_2601 Athe_2731 Athe_2731 Athe_2732 Athe_2732 Athe_2733 Athe_2733
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Athe_0217KEGG: csc:Csac_0117 phosphoprotein phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. (764 aa)
Athe_0218TIGRFAM: stage II sporulation protein D; SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: csc:Csac_0118 SpoIID/LytB domain-containing protein. (358 aa)
Athe_0628TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein; KEGG: csc:Csac_1196 PRC-barrel domain-containing protein. (76 aa)
Athe_0646KEGG: csc:Csac_1212 hypothetical protein. (94 aa)
Athe_0736RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (219 aa)
Athe_0784Peptidase U4 sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. (277 aa)
Athe_0787RNA polymerase, sigma 28 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (244 aa)
Athe_0788RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (255 aa)
Athe_1006TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: csc:Csac_2118 AbrB family transcriptional regulator. (183 aa)
Athe_1336TIGRFAM: stage IV sporulation protein B; PFAM: peptidase S55 SpoIVB; KEGG: csc:Csac_1899 peptidase S55, SpoIVB. (413 aa)
Athe_1337Sporulation transcriptional activator Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. (267 aa)
Athe_1789TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein; KEGG: csc:Csac_2332 stage II sporulation P family protein. (377 aa)
gprSpore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. (327 aa)
Athe_1953KEGG: csc:Csac_0999 hypothetical protein. (230 aa)
Athe_2601Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. (491 aa)
Athe_2731TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: csc:Csac_0092 SpoVA protein. (152 aa)
Athe_2732TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; KEGG: csc:Csac_0091 stage V sporulation protein AD. (336 aa)
Athe_2733TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; KEGG: csc:Csac_0090 SpoVA protein. (117 aa)
Your Current Organism:
Caldicellulosiruptor bescii
NCBI taxonomy Id: 521460
Other names: Anaerocellum thermophilum DSM 6725, C. bescii DSM 6725, Caldicellulosiruptor becscii str. DSM 6725, Caldicellulosiruptor bescii DSM 6725, Caldicellulosiruptor bescii strain DSM 6725
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