STRINGSTRING
Plim_0148 Plim_0148 Plim_1670 Plim_1670 Plim_2261 Plim_2261 Plim_3448 Plim_3448 Plim_4195 Plim_4195
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Plim_0148PFAM: carbon starvation protein CstA; KEGG: scl:sce6207 carbon starvation protein A. (596 aa)
Plim_1670PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: dal:Dalk_3943 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (1090 aa)
Plim_2261PFAM: sodium:dicarboxylate symporter; KEGG: scl:sce3537 proton glutamate symport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (488 aa)
Plim_3448Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (495 aa)
Plim_4195Aldehyde Dehydrogenase. (1025 aa)
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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