STRINGSTRING
bioD bioD Plim_0880 Plim_0880 Plim_1143 Plim_1143 Plim_1144 Plim_1144 Plim_1470 Plim_1470 Plim_1586 Plim_1586 Plim_1694 Plim_1694 bioB bioB Plim_2034 Plim_2034 Plim_2540 Plim_2540 Plim_2562 Plim_2562 Plim_2564 Plim_2564 Plim_3120 Plim_3120 Plim_3121 Plim_3121 Plim_3123 Plim_3123 Plim_3124 Plim_3124 Plim_3297 Plim_3297 Plim_3658 Plim_3658 Plim_3893 Plim_3893 Plim_3965 Plim_3965
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
bioDDethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. (248 aa)
Plim_0880PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hypothetical protein. (251 aa)
Plim_1143PFAM: aminotransferase class-III; KEGG: dvu:DVU2559 adenosylmethionine--8-amino-7- oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (477 aa)
Plim_1144PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr5634 putative 3-oxoacyl-[acyl-carrier- protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (269 aa)
Plim_14708-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; aminotransferase class-III; Orn/Lys/Arg decarboxylase major region; KEGG: mxa:MXAN_1258 8-amino-7-oxononanoate synthase. (402 aa)
Plim_1586TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: dac:Daci_0882 biotin--acetyl-CoA-carboxylase ligase. (289 aa)
Plim_1694PFAM: Beta-ketoacyl synthase; KEGG: ade:Adeh_2746 3-oxoacyl-[acyl-carrier- protein] synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (430 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (376 aa)
Plim_2034PFAM: short-chain dehydrogenase/reductase SDR; KEGG: oan:Oant_0571 3-oxoacyl-(acyl-carrier- protein) reductase. (260 aa)
Plim_2540KEGG: pfl:PFL_3106 BioH protein, putative. (240 aa)
Plim_2562Beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (435 aa)
Plim_25643-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (412 aa)
Plim_31203-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (429 aa)
Plim_3121Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ. (162 aa)
Plim_31233-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. (251 aa)
Plim_3124Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ. (167 aa)
Plim_3297Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ. (175 aa)
Plim_3658Beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (439 aa)
Plim_3893Short-chain dehydrogenase/reductase SDR. (273 aa)
Plim_3965Short-chain dehydrogenase/reductase SDR. (251 aa)
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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