(48 nodes) Mixed, incl. Iron-sulfur cluster assembly, and Sulfur relay system network (Pseudomonas massiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000826105_00407	Unannotated protein. (66 aa)
	GCA_000826105_00408	Unannotated protein. (264 aa)
	GCA_000826105_00510	Unannotated protein. (628 aa)
	GCA_000826105_00662	Unannotated protein. (254 aa)
	GCA_000826105_00680	Unannotated protein. (131 aa)
	GCA_000826105_00867	Unannotated protein. (484 aa)
	GCA_000826105_00990	Unannotated protein. (110 aa)
	GCA_000826105_01527	Unannotated protein. (259 aa)
	GCA_000826105_01564	Unannotated protein. (381 aa)
	GCA_000826105_01565	Unannotated protein. (84 aa)
	GCA_000826105_01785	Unannotated protein. (113 aa)
	GCA_000826105_02112	Unannotated protein. (251 aa)
	GCA_000826105_02281	Unannotated protein. (207 aa)
	GCA_000826105_02282	Unannotated protein. (265 aa)
	GCA_000826105_02462	Unannotated protein. (274 aa)
	GCA_000826105_02509	Unannotated protein. (79 aa)
	GCA_000826105_02551	Unannotated protein. (315 aa)
	GCA_000826105_02644	Unannotated protein. (251 aa)
	GCA_000826105_02645	Unannotated protein. (155 aa)
	GCA_000826105_02646	Unannotated protein. (404 aa)
	GCA_000826105_02647	Unannotated protein. (128 aa)
	GCA_000826105_02648	Unannotated protein. (107 aa)
	GCA_000826105_02649	Unannotated protein. (173 aa)
	GCA_000826105_02650	Unannotated protein. (620 aa)
	GCA_000826105_02652	Unannotated protein. (66 aa)
	GCA_000826105_02654	Unannotated protein. (382 aa)
	GCA_000826105_02655	Unannotated protein. (252 aa)
	GCA_000826105_02656	Unannotated protein. (346 aa)
	GCA_000826105_02658	Unannotated protein. (428 aa)
	GCA_000826105_02659	Unannotated protein. (213 aa)
	GCA_000826105_02741	Unannotated protein. (313 aa)
	GCA_000826105_02777	Unannotated protein. (477 aa)
	GCA_000826105_02778	Unannotated protein. (79 aa)
	GCA_000826105_02779	Unannotated protein. (356 aa)
	GCA_000826105_02882	Unannotated protein. (97 aa)
	GCA_000826105_02988	Unannotated protein. (284 aa)
	GCA_000826105_03781	Unannotated protein. (194 aa)
	GCA_000826105_03800	Unannotated protein. (176 aa)
	GCA_000826105_04260	Unannotated protein. (223 aa)
	GCA_000826105_04261	Unannotated protein. (130 aa)
	GCA_000826105_04262	Unannotated protein. (119 aa)
	GCA_000826105_04263	Unannotated protein. (97 aa)
	GCA_000826105_04264	Unannotated protein. (113 aa)
	GCA_000826105_04280	Unannotated protein. (382 aa)
	GCA_000826105_04281	Unannotated protein. (207 aa)
	GCA_000826105_04283	Unannotated protein. (388 aa)
	GCA_000826105_04284	Unannotated protein. (145 aa)
	GCA_000826105_04285	Unannotated protein. (246 aa)

Your Current Organism:

Pseudomonas massiliensis

NCBI taxonomy Id: 522492
Other names: CSUR P1334, DSM 29075, Pseudomonas sp. CB1, strain CB1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000826105_00407	GCA_000826105_00408	Unannotated protein.	Unannotated protein.	0.999
GCA_000826105_00407	GCA_000826105_00510	Unannotated protein.	Unannotated protein.	0.890
GCA_000826105_00407	GCA_000826105_00867	Unannotated protein.	Unannotated protein.	0.807
GCA_000826105_00407	GCA_000826105_01565	Unannotated protein.	Unannotated protein.	0.578
GCA_000826105_00407	GCA_000826105_02112	Unannotated protein.	Unannotated protein.	0.988
GCA_000826105_00407	GCA_000826105_02281	Unannotated protein.	Unannotated protein.	0.966
GCA_000826105_00407	GCA_000826105_02282	Unannotated protein.	Unannotated protein.	0.957
GCA_000826105_00407	GCA_000826105_02551	Unannotated protein.	Unannotated protein.	0.959
GCA_000826105_00407	GCA_000826105_02778	Unannotated protein.	Unannotated protein.	0.578
GCA_000826105_00407	GCA_000826105_04264	Unannotated protein.	Unannotated protein.	0.583
GCA_000826105_00407	GCA_000826105_04280	Unannotated protein.	Unannotated protein.	0.583
GCA_000826105_00408	GCA_000826105_00407	Unannotated protein.	Unannotated protein.	0.999
GCA_000826105_00408	GCA_000826105_00510	Unannotated protein.	Unannotated protein.	0.980
GCA_000826105_00408	GCA_000826105_00867	Unannotated protein.	Unannotated protein.	0.853
GCA_000826105_00408	GCA_000826105_02112	Unannotated protein.	Unannotated protein.	0.986
GCA_000826105_00408	GCA_000826105_02281	Unannotated protein.	Unannotated protein.	0.992
GCA_000826105_00408	GCA_000826105_02282	Unannotated protein.	Unannotated protein.	0.961
GCA_000826105_00408	GCA_000826105_02551	Unannotated protein.	Unannotated protein.	0.960
GCA_000826105_00510	GCA_000826105_00407	Unannotated protein.	Unannotated protein.	0.890
GCA_000826105_00510	GCA_000826105_00408	Unannotated protein.	Unannotated protein.	0.980