(31 nodes) Mixed, incl. Starch and sucrose metabolism, and Non-homologous end-joining network (Pseudomonas massiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000826105_00862	Unannotated protein. (817 aa)
	GCA_000826105_01259	Unannotated protein. (523 aa)
	GCA_000826105_01260	Unannotated protein. (596 aa)
	GCA_000826105_01261	Unannotated protein. (698 aa)
	GCA_000826105_01262	Unannotated protein. (928 aa)
	GCA_000826105_01263	Unannotated protein. (117 aa)
	GCA_000826105_01264	Unannotated protein. (725 aa)
	GCA_000826105_01266	Unannotated protein. (119 aa)
	GCA_000826105_01267	Unannotated protein. (640 aa)
	GCA_000826105_01268	Unannotated protein. (1108 aa)
	GCA_000826105_01269	Unannotated protein. (673 aa)
	GCA_000826105_01274	Unannotated protein. (43 aa)
	GCA_000826105_01804	Unannotated protein. (168 aa)
	GCA_000826105_01975	Unannotated protein. (151 aa)
	GCA_000826105_03264	Unannotated protein. (894 aa)
	GCA_000826105_03488	Unannotated protein. (433 aa)
	GCA_000826105_03646	Unannotated protein. (143 aa)
	GCA_000826105_03647	Unannotated protein. (678 aa)
	GCA_000826105_03658	Unannotated protein. (688 aa)
	GCA_000826105_03674	Unannotated protein. (167 aa)
	GCA_000826105_03726	Unannotated protein. (296 aa)
	GCA_000826105_03769	Unannotated protein. (306 aa)
	GCA_000826105_03821	Unannotated protein. (173 aa)
	GCA_000826105_03822	Unannotated protein. (63 aa)
	GCA_000826105_03823	Unannotated protein. (78 aa)
	GCA_000826105_03824	Unannotated protein. (607 aa)
	GCA_000826105_03825	Unannotated protein. (266 aa)
	GCA_000826105_03826	Unannotated protein. (56 aa)
	GCA_000826105_03827	Unannotated protein. (351 aa)
	GCA_000826105_03940	Unannotated protein. (239 aa)
	GCA_000826105_03941	Unannotated protein. (139 aa)

Your Current Organism:

Pseudomonas massiliensis

NCBI taxonomy Id: 522492
Other names: CSUR P1334, DSM 29075, Pseudomonas sp. CB1, strain CB1

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Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000826105_00862	GCA_000826105_01259	Unannotated protein.	Unannotated protein.	0.994
GCA_000826105_00862	GCA_000826105_01260	Unannotated protein.	Unannotated protein.	0.941
GCA_000826105_00862	GCA_000826105_01261	Unannotated protein.	Unannotated protein.	0.959
GCA_000826105_00862	GCA_000826105_01262	Unannotated protein.	Unannotated protein.	0.837
GCA_000826105_00862	GCA_000826105_01264	Unannotated protein.	Unannotated protein.	0.949
GCA_000826105_00862	GCA_000826105_01266	Unannotated protein.	Unannotated protein.	0.957
GCA_000826105_00862	GCA_000826105_01267	Unannotated protein.	Unannotated protein.	0.969
GCA_000826105_00862	GCA_000826105_01268	Unannotated protein.	Unannotated protein.	0.932
GCA_000826105_00862	GCA_000826105_01269	Unannotated protein.	Unannotated protein.	0.862
GCA_000826105_00862	GCA_000826105_03658	Unannotated protein.	Unannotated protein.	0.659
GCA_000826105_00862	GCA_000826105_03769	Unannotated protein.	Unannotated protein.	0.455
GCA_000826105_00862	GCA_000826105_03824	Unannotated protein.	Unannotated protein.	0.552
GCA_000826105_00862	GCA_000826105_03940	Unannotated protein.	Unannotated protein.	0.455
GCA_000826105_01259	GCA_000826105_00862	Unannotated protein.	Unannotated protein.	0.994
GCA_000826105_01259	GCA_000826105_01260	Unannotated protein.	Unannotated protein.	0.992
GCA_000826105_01259	GCA_000826105_01261	Unannotated protein.	Unannotated protein.	0.982
GCA_000826105_01259	GCA_000826105_01262	Unannotated protein.	Unannotated protein.	0.940
GCA_000826105_01259	GCA_000826105_01263	Unannotated protein.	Unannotated protein.	0.793
GCA_000826105_01259	GCA_000826105_01264	Unannotated protein.	Unannotated protein.	0.990
GCA_000826105_01259	GCA_000826105_01266	Unannotated protein.	Unannotated protein.	0.970