(44 nodes) Oxidative phosphorylation network (Pseudomonas massiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000826105_04299	Unannotated protein. (489 aa)
	GCA_000826105_00259	Unannotated protein. (135 aa)
	GCA_000826105_00392	Unannotated protein. (83 aa)
	GCA_000826105_00399	Unannotated protein. (482 aa)
	GCA_000826105_00400	Unannotated protein. (450 aa)
	GCA_000826105_00600	Unannotated protein. (261 aa)
	GCA_000826105_00971	Unannotated protein. (736 aa)
	GCA_000826105_01113	Unannotated protein. (141 aa)
	GCA_000826105_01114	Unannotated protein. (458 aa)
	GCA_000826105_01115	Unannotated protein. (286 aa)
	GCA_000826105_01116	Unannotated protein. (514 aa)
	GCA_000826105_01117	Unannotated protein. (178 aa)
	GCA_000826105_01118	Unannotated protein. (156 aa)
	GCA_000826105_01119	Unannotated protein. (85 aa)
	GCA_000826105_01120	Unannotated protein. (289 aa)
	GCA_000826105_01221	Unannotated protein. (469 aa)
	GCA_000826105_01644	Unannotated protein. (915 aa)
	GCA_000826105_01964	Unannotated protein. (296 aa)
	GCA_000826105_01965	Unannotated protein. (109 aa)
	GCA_000826105_01966	Unannotated protein. (207 aa)
	GCA_000826105_01967	Unannotated protein. (674 aa)
	GCA_000826105_01968	Unannotated protein. (310 aa)
	GCA_000826105_02240	Unannotated protein. (175 aa)
	GCA_000826105_02321	Unannotated protein. (477 aa)
	GCA_000826105_02322	Unannotated protein. (335 aa)
	GCA_000826105_02391	Unannotated protein. (432 aa)
	GCA_000826105_02878	Unannotated protein. (496 aa)
	GCA_000826105_02933	Unannotated protein. (230 aa)
	GCA_000826105_03531	Unannotated protein. (352 aa)
	GCA_000826105_03556	Unannotated protein. (128 aa)
	GCA_000826105_03557	Unannotated protein. (122 aa)
	GCA_000826105_03558	Unannotated protein. (590 aa)
	GCA_000826105_03559	Unannotated protein. (234 aa)
	GCA_000826105_04287	Unannotated protein. (137 aa)
	GCA_000826105_04288	Unannotated protein. (228 aa)
	GCA_000826105_04289	Unannotated protein. (594 aa)
	GCA_000826105_04290	Unannotated protein. (165 aa)
	GCA_000826105_04292	Unannotated protein. (905 aa)
	GCA_000826105_04293	Unannotated protein. (333 aa)
	GCA_000826105_04294	Unannotated protein. (182 aa)
	GCA_000826105_04295	Unannotated protein. (166 aa)
	GCA_000826105_04296	Unannotated protein. (102 aa)
	GCA_000826105_04297	Unannotated protein. (616 aa)
	GCA_000826105_04298	Unannotated protein. (510 aa)

Your Current Organism:

Pseudomonas massiliensis

NCBI taxonomy Id: 522492
Other names: CSUR P1334, DSM 29075, Pseudomonas sp. CB1, strain CB1

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000826105_00259	GCA_000826105_01116	Unannotated protein.	Unannotated protein.	0.463
GCA_000826105_00259	GCA_000826105_01120	Unannotated protein.	Unannotated protein.	0.562
GCA_000826105_00392	GCA_000826105_00399	Unannotated protein.	Unannotated protein.	0.931
GCA_000826105_00392	GCA_000826105_00400	Unannotated protein.	Unannotated protein.	0.928
GCA_000826105_00392	GCA_000826105_00600	Unannotated protein.	Unannotated protein.	0.576
GCA_000826105_00392	GCA_000826105_01113	Unannotated protein.	Unannotated protein.	0.868
GCA_000826105_00392	GCA_000826105_01114	Unannotated protein.	Unannotated protein.	0.874
GCA_000826105_00392	GCA_000826105_01115	Unannotated protein.	Unannotated protein.	0.590
GCA_000826105_00392	GCA_000826105_01116	Unannotated protein.	Unannotated protein.	0.586
GCA_000826105_00392	GCA_000826105_01117	Unannotated protein.	Unannotated protein.	0.554
GCA_000826105_00392	GCA_000826105_01119	Unannotated protein.	Unannotated protein.	0.578
GCA_000826105_00392	GCA_000826105_01221	Unannotated protein.	Unannotated protein.	0.921
GCA_000826105_00392	GCA_000826105_01644	Unannotated protein.	Unannotated protein.	0.924
GCA_000826105_00392	GCA_000826105_01964	Unannotated protein.	Unannotated protein.	0.406
GCA_000826105_00392	GCA_000826105_01966	Unannotated protein.	Unannotated protein.	0.888
GCA_000826105_00392	GCA_000826105_01967	Unannotated protein.	Unannotated protein.	0.872
GCA_000826105_00392	GCA_000826105_01968	Unannotated protein.	Unannotated protein.	0.880
GCA_000826105_00392	GCA_000826105_02240	Unannotated protein.	Unannotated protein.	0.572
GCA_000826105_00392	GCA_000826105_02391	Unannotated protein.	Unannotated protein.	0.805
GCA_000826105_00392	GCA_000826105_02933	Unannotated protein.	Unannotated protein.	0.576