STRINGSTRING
ycdX ycdX EHY69970.1 EHY69970.1 flgB flgB flgC flgC flgE flgE flgF flgF flgG flgG flgH flgH flgI flgI flgL flgL EHY70280.1 EHY70280.1 EHY70330.1 EHY70330.1 EHY70378.1 EHY70378.1 EHY70389.1 EHY70389.1 EHY70461.1 EHY70461.1 uspE uspE EHY70650.1 EHY70650.1 EHY70672.1 EHY70672.1 ycgR ycgR fliE fliE fliF fliF fliG fliG fliH fliH fliI fliI fliJ fliJ fliL fliL fliM fliM fliN fliN STY2763a STY2763a SBOV27461 SBOV27461 frdC frdC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ycdXKEGG: vfi:VF_A0065 1.5e-52 putative hydrolase K04477; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1136; ycdX; Belongs to the PHP family. (245 aa)
EHY69970.1Cytoplasmic chaperone TorD; KEGG: vfi:VF_A0083 2.3e-08 dmsD; twin-argninine leader-binding protein for DmsA and TorA K00397; Psort location: CytoplasmicMembrane, score: 9.82; locus tag in AE006468 is STM1137; ycdY. (184 aa)
flgBFlagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (138 aa)
flgCFlagellar basal-body rod protein FlgC; Psort location: Periplasmic, score: 10.00; locus tag in AE006468 is STM1175; flgC; Belongs to the flagella basal body rod proteins family. (134 aa)
flgEFlagellar hook protein FlgE; Psort location: Extracellular, score: 10.00; locus tag in AE006468 is STM1177; flgE. (405 aa)
flgFFlagellar basal-body rod protein FlgF; Psort location: Periplasmic, score: 9.44; locus tag in AE006468 is STM1178; flgF. (251 aa)
flgGFlagellar basal-body rod protein FlgG; Psort location: Extracellular, score: 10.00; locus tag in AE006468 is STM1179; flgG; Belongs to the flagella basal body rod proteins family. (260 aa)
flgHFlagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (237 aa)
flgIFlagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (365 aa)
flgLFlagellar hook-associated protein 3; KEGG: mav:MAV_3116 0.0029 argB; acetylglutamate kinase K00930; Psort location: Extracellular, score: 10.00; locus tag in AE006468 is STM1184; flgL. (317 aa)
EHY70280.1Type III secretion apparatus protein, YscQ/HrcQ family; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1418; ssaQ. (322 aa)
EHY70330.1YdgA family protein; KEGG: hiq:CGSHiGG_01830 4.3e-32 proA; hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1466; ydgA. (502 aa)
EHY70378.1Hypothetical protein; KEGG: lbr:LVIS_0669 0.0031 exoribonuclease R; K12573 ribonuclease R; locus tag in AE006468 is STM1513. (60 aa)
EHY70389.1Hypothetical protein; KEGG: ecx:EcHS_A3634 7.3e-14 putative dITP- and XTP- hydrolase; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1521; marC. (221 aa)
EHY70461.1Putative inner membrane protein; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1591; ydcZ. (149 aa)
uspEUniversal stress family protein; Psort location: Cytoplasmic, score: 8.96; locus tag in AE006468 is STM1661; ydaA. (315 aa)
EHY70650.1Hypothetical protein; KEGG: lbr:LVIS_0669 0.00016 exoribonuclease R; K12573 ribonuclease R; locus tag in AE006468 is STM1728; yciG. (60 aa)
EHY70672.1Hypothetical protein; KEGG: sbc:SbBS512_E3890 1.0e-16 putative dITP- and XTP- hydrolase; Psort location: CytoplasmicMembrane, score: 10.00; locus tag in AE006468 is STM1748; ychE. (215 aa)
ycgRMotility regulatory protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility. (244 aa)
fliEFlagellar hook-basal body complex protein FliE; Psort location: Periplasmic, score: 10.00; locus tag in AE006468 is STM1968; fliE. (104 aa)
fliFFlagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (531 aa)
fliGFlagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (331 aa)
fliHFlagellar assembly protein FliH; Psort location: Cytoplasmic, score: 9.97; locus tag in AE006468 is STM1971; fliH. (235 aa)
fliIFlagellar protein export ATPase FliI; KEGG: sed:SeD_A1270 1.0e-238 fliI; flagellum-specific ATP synthase K02412; Psort location: Cytoplasmic, score: 9.12; locus tag in AE006468 is STM1972; fliI. (456 aa)
fliJFlagellar export protein FliJ; Flagellar protein that affects chemotactic events. Belongs to the FliJ family. (147 aa)
fliLFlagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (155 aa)
fliMFlagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (334 aa)
fliNFlagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. (137 aa)
STY2763aHypothetical protein; KEGG: aha:AHA_1764 4.0e-13 ubiquitin ligase sinat5 K01932; locus tag in AE006468 is STM2518; yfgJ. (72 aa)
SBOV27461Hypothetical protein; Locus tag in AE006468 is STM2671; yfiR. (202 aa)
frdCFumarate reductase subunit C; Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane. (131 aa)
Your Current Organism:
Salmonella enterica houtenae
NCBI taxonomy Id: 523831
Other names: S. enterica subsp. houtenae str. ATCC BAA-1581, Salmonella enterica subsp. houtenae str. ATCC BAA-1581
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