STRINGSTRING
sec11 sec11 HFX_0149 HFX_0149 HFX_0239 HFX_0239 HFX_0278 HFX_0278 rpaA rpaA HFX_0286 HFX_0286 HFX_0288 HFX_0288 HFX_0292 HFX_0292 HFX_0323 HFX_0323 tiaS tiaS HFX_0344 HFX_0344 HFX_0358 HFX_0358 lepB lepB HFX_0854 HFX_0854 artA artA HFX_1114 HFX_1114 HFX_1141 HFX_1141 HFX_1383 HFX_1383 yhcR1 yhcR1 HFX_1414 HFX_1414 rpaC rpaC HFX_1416 HFX_1416 hmu hmu HFX_1489 HFX_1489 HFX_1621 HFX_1621 HFX_1622 HFX_1622 HFX_1669 HFX_1669 HFX_1772 HFX_1772 trkA-4 trkA-4 HFX_1783 HFX_1783 HFX_2057 HFX_2057 pus10 pus10 trmY trmY HFX_2104 HFX_2104 HFX_2244 HFX_2244 HFX_2379 HFX_2379 HFX_2380 HFX_2380 HFX_2426 HFX_2426 HFX_2456 HFX_2456 HFX_2457 HFX_2457 HFX_2458 HFX_2458 sec11-2 sec11-2 HFX_2851 HFX_2851 ychF-2 ychF-2 HFX_2978 HFX_2978 pppA pppA HFX_3030 HFX_3030 HFX_3031 HFX_3031 gbp3 gbp3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sec11Signal sequence peptidase. (291 aa)
HFX_0149Hypothetical protein. (687 aa)
HFX_0239Putative metal-binding protein. (114 aa)
HFX_0278Hypothetical protein. (196 aa)
rpaAReplication factor A. (311 aa)
HFX_0286Hypothetical protein. (331 aa)
HFX_0288Hypothetical protein. (377 aa)
HFX_0292Hypothetical protein. (380 aa)
HFX_0323Hypothetical protein. (324 aa)
tiaSHypothetical protein; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA. (422 aa)
HFX_0344Allosteric regulator of homoserine dehydrogenase. (189 aa)
HFX_0358Hypothetical protein. (118 aa)
lepBSignal peptidase I. (178 aa)
HFX_0854Hypothetical protein. (307 aa)
artAHypothetical protein. (310 aa)
HFX_1114Hypothetical protein. (332 aa)
HFX_1141Hypothetical protein. (101 aa)
HFX_1383tyrA operon protein. (467 aa)
yhcR1Phosphoesterase. (260 aa)
HFX_1414Hypothetical protein. (629 aa)
rpaCReplication factor A. (426 aa)
HFX_1416Hypothetical protein. (126 aa)
hmuHalomucin. (997 aa)
HFX_1489Hypothetical protein. (439 aa)
HFX_1621Transcriptional regulator. (179 aa)
HFX_1622Hypothetical protein; Belongs to the UPF0212 family. (118 aa)
HFX_1669Hypothetical protein. (283 aa)
HFX_1772Hypothetical protein. (136 aa)
trkA-4TrkA-N domain protein. (485 aa)
HFX_1783Hypothetical protein. (97 aa)
HFX_2057Hypothetical protein. (81 aa)
pus10Hypothetical protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs. (427 aa)
trmYHypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family. (198 aa)
HFX_2104Putative archaeosine tRNA-ribosyltransferase. (585 aa)
HFX_2244Hypothetical protein. (360 aa)
HFX_2379Hypothetical protein. (148 aa)
HFX_2380Hypothetical protein. (148 aa)
HFX_2426Transcriptional regulator. (235 aa)
HFX_2456Hypothetical protein. (174 aa)
HFX_2457Archaeal flagellin-like protein. (158 aa)
HFX_2458Hypothetical protein. (145 aa)
sec11-2Signal sequence peptidase. (196 aa)
HFX_2851Hypothetical protein. (379 aa)
ychF-2Translation-associated GTPase. (396 aa)
HFX_2978Hypothetical protein. (167 aa)
pppAPrepilin signal peptidase. (337 aa)
HFX_3030Hypothetical protein. (355 aa)
HFX_3031Hypothetical protein. (130 aa)
gbp3GTP-binding proteinlike protein. (213 aa)
Your Current Organism:
Haloferax mediterranei
NCBI taxonomy Id: 523841
Other names: H. mediterranei ATCC 33500, Haloferax mediterranei ATCC 33500, Haloferax mediterranei CGMCC 1.2087, Haloferax mediterranei JCM 8866, Haloferax mediterranei R-4, Haloferax mediterranei str. ATCC 33500, Haloferax mediterranei strain ATCC 33500
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