(5 nodes) Mixed, incl. KOW (Kyprides, Ouzounis, Woese) motif., and Nucleotide-binding alpha-beta plait domain superfamily network (Sulfurospirillum deleyianum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rplX	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (78 aa)
	rpmC	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: cff:CFF8240_0042 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (62 aa)
	rplV	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (110 aa)
	rplW	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (93 aa)
	rplD	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. (204 aa)

Your Current Organism:

Sulfurospirillum deleyianum

NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rplV	Sdel_1967	Sdel_1963	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplD	rplW	Sdel_1967	Sdel_1966	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplD	rplX	Sdel_1967	Sdel_1957	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.998
rplD	rpmC	Sdel_1967	Sdel_1960	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: cff:CFF8240_0042 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rplV	rplD	Sdel_1963	Sdel_1967	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.	0.999
rplV	rplW	Sdel_1963	Sdel_1966	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplV	rplX	Sdel_1963	Sdel_1957	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.999
rplV	rpmC	Sdel_1963	Sdel_1960	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: cff:CFF8240_0042 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rplW	rplD	Sdel_1966	Sdel_1967	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.	0.999
rplW	rplV	Sdel_1966	Sdel_1963	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplW	rplX	Sdel_1966	Sdel_1957	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.999
rplW	rpmC	Sdel_1966	Sdel_1960	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: cff:CFF8240_0042 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rplX	rplD	Sdel_1957	Sdel_1967	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.	0.998
rplX	rplV	Sdel_1957	Sdel_1963	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplX	rplW	Sdel_1957	Sdel_1966	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplX	rpmC	Sdel_1957	Sdel_1960	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: cff:CFF8240_0042 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rpmC	rplD	Sdel_1960	Sdel_1967	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: cff:CFF8240_0042 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.	0.999
rpmC	rplV	Sdel_1960	Sdel_1963	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: cff:CFF8240_0042 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rpmC	rplW	Sdel_1960	Sdel_1966	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: cff:CFF8240_0042 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rpmC	rplX	Sdel_1960	Sdel_1957	TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: cff:CFF8240_0042 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.999

Server load: medium (46%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About