STRINGSTRING
Sdel_0040 Sdel_0040 Sdel_0086 Sdel_0086 Sdel_0088 Sdel_0088 Sdel_0089 Sdel_0089 Sdel_0090 Sdel_0090 Sdel_0091 Sdel_0091 Sdel_0092 Sdel_0092 Sdel_0093 Sdel_0093 Sdel_0385 Sdel_0385 Sdel_1092 Sdel_1092 Sdel_1093 Sdel_1093 hypA hypA Sdel_1095 Sdel_1095 Sdel_1096 Sdel_1096 Sdel_1097 Sdel_1097 Sdel_1098 Sdel_1098 Sdel_1099 Sdel_1099 Sdel_1100 Sdel_1100 Sdel_1101 Sdel_1101 Sdel_1102 Sdel_1102 Sdel_1103 Sdel_1103 Sdel_1104 Sdel_1104 Sdel_1105 Sdel_1105 Sdel_1106 Sdel_1106 Sdel_1107 Sdel_1107 Sdel_1586 Sdel_1586 Sdel_1587 Sdel_1587 corA corA Sdel_1590 Sdel_1590 Sdel_1591 Sdel_1591 Sdel_1592 Sdel_1592 Sdel_1593 Sdel_1593 Sdel_1899 Sdel_1899 Sdel_1932 Sdel_1932 Sdel_2187 Sdel_2187 Sdel_2253 Sdel_2253
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sdel_0040KEGG: vei:Veis_3471 hypothetical protein. (94 aa)
Sdel_0086KEGG: sun:SUN_0071 hypothetical protein. (222 aa)
Sdel_0088KEGG: cco:CCC13826_1645 putative phage integrase. (238 aa)
Sdel_0089KEGG: abu:Abu_1069 hypothetical protein. (207 aa)
Sdel_0090PFAM: glutathionylspermidine synthase; KEGG: abu:Abu_1068 glutathionylspermidine synthase family protein. (393 aa)
Sdel_0091PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ccv:CCV52592_1540 glycerate dehydrogenase. (310 aa)
Sdel_0092PFAM: protein of unknown function DUF520; KEGG: cco:CCC13826_1649 putative nucleotide-binding protein; Belongs to the UPF0234 family. (165 aa)
Sdel_0093KEGG: tdn:Suden_1266 hypothetical protein. (99 aa)
Sdel_0385PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: cha:CHAB381_1616 iron-sulfur cluster-binding domain-containing protein. (420 aa)
Sdel_1092TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nis:NIS_1852 HAD-superfamily hydrolase. (212 aa)
Sdel_1093PFAM: GCN5-related N-acetyltransferase; KEGG: csa:Csal_2792 GCN5-related N- acetyltransferase. (166 aa)
hypAHydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (113 aa)
Sdel_1095TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: shl:Shal_2270 hydrogenase expression/formation protein HypE. (334 aa)
Sdel_1096TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: tcx:Tcr_2041 hydrogenase expression/formation protein HypD; Belongs to the HypD family. (375 aa)
Sdel_1097TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cla:Cla_0790 hydrogenase assembly chaperone HypC. (89 aa)
Sdel_1098TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cco:CCC13826_1096 hydrogenase accessory protein HypB. (278 aa)
Sdel_1099KEGG: tdn:Suden_0058 hypothetical protein. (228 aa)
Sdel_1100NikR nickel binding protein; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. (137 aa)
Sdel_1101(NiFe) hydrogenase maturation protein HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide. (744 aa)
Sdel_1102KEGG: abu:Abu_1424 hypothetical protein. (554 aa)
Sdel_1103TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: cff:CFF8240_0937 hydrogenase maturation protease HydD. (179 aa)
Sdel_1104TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: cla:Cla_0714 Ni/Fe hydrogenase, cytochrome b subunit. (225 aa)
Sdel_1105PFAM: nickel-dependent hydrogenase large subunit; KEGG: cff:CFF8240_0939 quinone-reactive Ni/Fe- hydrogenase large chain; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (584 aa)
Sdel_1106KEGG: wsu:WS1687 Ni/Fe-hydrogenase small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Twin-arginine translocation pathway, signal sequence, subgroup. (385 aa)
Sdel_1107KEGG: abu:Abu_1399 hypothetical protein. (132 aa)
Sdel_1586Hypothetical protein. (76 aa)
Sdel_1587PFAM: protein of unknown function DUF891; KEGG: sun:SUN_2445 hypothetical protein. (118 aa)
corAMagnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. (320 aa)
Sdel_1590PFAM: Peptidase M23; KEGG: cla:Cla_1220 peptidase, M23/M37 family. (390 aa)
Sdel_1591KEGG: cha:CHAB381_1628 hypothetical protein. (240 aa)
Sdel_1592D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: cha:CHAB381_1615 glycolate oxidase, subunit GlcD. (459 aa)
Sdel_1593TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: cco:CCC13826_1329 putative molybdopterin biosynthesis protein. (273 aa)
Sdel_1899TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sun:SUN_0197 HAD-superfamily hydrolase. (212 aa)
Sdel_1932TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dal:Dalk_1233 HAD-superfamily hydrolase, subfamily IA, variant 1. (218 aa)
Sdel_2187PFAM: Integral membrane protein TerC; KEGG: ccv:CCV52592_1505 protein YegH. (245 aa)
Sdel_2253KEGG: glycerate kinase; K00865 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family. (380 aa)
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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