STRINGSTRING
Sdel_0713 Sdel_0713 Sdel_0714 Sdel_0714 Sdel_0715 Sdel_0715 Sdel_1694 Sdel_1694 Sdel_1696 Sdel_1696 Sdel_1697 Sdel_1697 Sdel_1699 Sdel_1699
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sdel_0713PFAM: LrgB family protein; KEGG: abu:Abu_0184 LrgB-like protein. (236 aa)
Sdel_0714PFAM: LrgA family protein; KEGG: abu:Abu_0183 LrgA family protein. (118 aa)
Sdel_0715PFAM: outer membrane porin; KEGG: glo:Glov_3627 outer membrane porin. (451 aa)
Sdel_1694PFAM: Auxin Efflux Carrier; KEGG: cff:CFF8240_1027 putative permease. (303 aa)
Sdel_1696PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1475 ABC transporter, ATP-binding protein. (531 aa)
Sdel_1697Diguanylate cyclase; KEGG: vvu:VV2_0548 signal transduction protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein. (762 aa)
Sdel_1699KEGG: wsu:WS1844 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase. (578 aa)
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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