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| | gatC | glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (96 aa) |
| | dnaA | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (441 aa) |
| | gyrB | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (770 aa) |
| | Sdel_0023 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0987 putative oligopeptide transporter. (272 aa) |
| | Sdel_0024 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0988 oligopeptide ABC transporter ATP- binding protein. (254 aa) |
| | pyrG | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (546 aa) |
| | Sdel_0052 | TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; KEGG: tdn:Suden_1239 anaerobic ribonucleoside triphosphate reductase. (701 aa) |
| | Sdel_0054 | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (788 aa) |
| | Sdel_0066 | PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cco:CCC13826_1825 recombination factor protein RarA. (396 aa) |
| | purM | KEGG: nam:NAMH_0144 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein. (331 aa) |
| | coaE | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. (201 aa) |
| | thrS | TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: cha:CHAB381_0611 threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. (605 aa) |
| | Sdel_0094 | Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid. (120 aa) |
| | Sdel_0101 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS2022 ABC transporter ATP-binding protein. (244 aa) |
| | Sdel_0114 | TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: yen:YE2138 pyridoxamine kinase; Belongs to the pyridoxine kinase family. (282 aa) |
| | Sdel_0125 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0277 amino acid permease ATP-binding protein. (246 aa) |
| | Sdel_0130 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cco:CCC13826_1791 ATP-dependent DNA helicase PcrA. (253 aa) |
| | Sdel_0137 | PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: nis:NIS_0287 AAA family ATPase. (577 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (298 aa) |
| | hisI | TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: nis:NIS_1544 histidine biosynthesis bifunctional protein HisI; In the N-terminal section; belongs to the PRA-CH family. (227 aa) |
| | clpX | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (412 aa) |
| | Sdel_0187 | TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: ccv:CCV52592_0868 rod shape-determining protein MreB. (344 aa) |
| | carB | TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: ccv:CCV52592_0870 carbamoyl phosphate synthase large subunit; Belongs to the CarB family. (1085 aa) |
| | Sdel_0210 | KEGG: cha:CHAB381_1305 twitching mobility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (399 aa) |
| | ndk | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. (137 aa) |
| | thrB | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. (294 aa) |
| | Sdel_0260 | KEGG: ccv:CCV52592_0132 hypothetical protein. (115 aa) |
| | Sdel_0292 | TIGRFAM:2-amino-4-hydroxy-6- hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK; KEGG: sun:SUN_1040 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase. (155 aa) |
| | Sdel_0294 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ccv:CCV52592_0368 ParaA family ATPase. (290 aa) |
| | Sdel_0302 | PFAM: WbqC-like family protein; KEGG: mmw:Mmwyl1_0831 WbqC-like family protein. (230 aa) |
| | prs | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (309 aa) |
| | Sdel_0320 | PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: ccv:CCV52592_1462 putative alkyl- dihydroxyacetone phosphate synthase. (385 aa) |
| | gyrA | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (846 aa) |
| | Sdel_0336 | Hypothetical protein; KEGG: cti:RALTA_B1244 putative aspartate/glutamate/hydantoin racemase. (278 aa) |
| | metN | ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (319 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa) |
| | Sdel_0408 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_1535 ABC transporter, ATP-binding protein. (214 aa) |
| | gmk | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. (204 aa) |
| | argS | KEGG: nis:NIS_1495 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase. (528 aa) |
| | rsfS | Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). Belongs to the Iojap/RsfS family. (293 aa) |
| | pgk | PFAM: phosphoglycerate kinase; KEGG: cjr:CJE1589 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (399 aa) |
| | tilS | tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (331 aa) |
| | panC | Pantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (273 aa) |
| | dnaX | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (546 aa) |
| | rho | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (447 aa) |
| | Sdel_0460 | PFAM: filamentation induced by cAMP protein Fic; KEGG: pmu:PM1770 hypothetical protein. (388 aa) |
| | Sdel_0465 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: tdn:Suden_1945 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. (407 aa) |
| | Sdel_0478 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cla:Cla_1114 branched-chain amino acid ABC transporter, ATP-binding protein. (255 aa) |
| | Sdel_0479 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cju:C8J_0951 high affinity branched-chain amino acid ABC transporter, ATP-binding protein. (231 aa) |
| | ileS | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (918 aa) |
| | gatA | glutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (452 aa) |
| | Sdel_0492 | UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (437 aa) |
| | mutS2 | Smr protein/MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (733 aa) |
| | Sdel_0501 | Pyruvate kinase; KEGG: cff:CFF8240_0630 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family. (481 aa) |
| | proB | Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. (255 aa) |
| | Sdel_0508 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: wsu:WS0509 ParA family protein. (261 aa) |
| | atpA | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (501 aa) |
| | atpG | ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (294 aa) |
| | atpD | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (465 aa) |
| | atpC | ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. (131 aa) |
| | Sdel_0524 | KEGG: tdn:Suden_1394 fis family transcriptional regulator. (254 aa) |
| | accD | acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (292 aa) |
| | Sdel_0554 | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (938 aa) |
| | dnaJ | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (376 aa) |
| | Sdel_0574 | PFAM: Domain of unknown function DUF1882; KEGG: cff:CFF8240_1140 hypothetical protein. (180 aa) |
| | lysS | TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: nis:NIS_1177 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. (506 aa) |
| | Sdel_0580 | Twitching motility protein; KEGG: ccv:CCV52592_0998 putative type II/IV secretion system protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (355 aa) |
| | coaX | Transcriptional activator, Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis. (207 aa) |
| | hisG | ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily. (203 aa) |
| | guaA | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. (511 aa) |
| | purD | KEGG: nis:NIS_1337 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP- grasp (A) domain; Phosphoribosylglycinamide synthetase, N- domain; Phosphoribosylglycinamide synthetase, C-domain; ATP-dependent carboxylate-amine ligase domain protein ATP- grasp; Belongs to the GARS family. (424 aa) |
| | pckA | Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (525 aa) |
| | pheS | KEGG: cff:CFF8240_1254 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (330 aa) |
| | pheT | TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: ccv:CCV52592_0517 phenylalanyl-tRNA synthetase subunit beta. (779 aa) |
| | Sdel_0624 | PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; KEGG: nis:NIS_0517 DNA mismatch repair ATPase MutS. (977 aa) |
| | Sdel_0642 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0146 cell division protein FtsE. (223 aa) |
| | Sdel_0643 | KEGG: ccv:CCV52592_0479 cell division protein FtsX. (269 aa) |
| | pyrH | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. (239 aa) |
| | tyrS | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. (402 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (190 aa) |
| | aspS | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (582 aa) |
| | nadK | NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. (291 aa) |
| | Sdel_0658 | SMC domain protein; May be involved in recombinational repair of damaged DNA. (513 aa) |
| | Sdel_0672 | KEGG: sun:SUN_1127 hypothetical protein. (337 aa) |
| | metG | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (642 aa) |
| | Sdel_0680 | PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: abu:Abu_1214 glutamylglutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (380 aa) |
| | Sdel_0681 | TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; Asn/Gln amidotransferase; KEGG: sun:SUN_1139 glutaminyl-tRNA synthetase. (748 aa) |
| | Sdel_0694 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0390 ABC transporter ATPase. (225 aa) |
| | ychF | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa) |
| | Sdel_0750 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: gsu:GSU0189 ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. (463 aa) |
| | groL | Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (546 aa) |
| | groS | Chaperonin Cpn10; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. (88 aa) |
| | Sdel_0766 | PFAM: Relaxase/mobilization nuclease family protein; KEGG: sun:SUN_2446 DNA relaxase TraI. (521 aa) |
| | Sdel_0767 | Hypothetical protein. (185 aa) |
| | Sdel_0769 | Hypothetical protein. (105 aa) |
| | Sdel_0778 | PFAM: IstB domain protein ATP-binding protein; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein. (250 aa) |
| | Sdel_0785 | SMART: AAA ATPase; KEGG: sun:SUN_0582 hypothetical protein. (399 aa) |
| | Sdel_0787 | Hypothetical protein. (52 aa) |
| | Sdel_0788 | PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 putative transposase for insertion sequence element IS5376. (282 aa) |
| | Sdel_0793 | Type I secretion system ATPase; KEGG: cco:CCC13826_0891 hypothetical protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (718 aa) |
| | Sdel_0801 | TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: wsu:WS1121 heavy metal-transporting ATPase. (682 aa) |
| | Sdel_0814 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dds:Ddes_0989 ABC transporter related. (260 aa) |
| | Sdel_0816 | PFAM: periplasmic binding protein; KEGG: nam:NAMH_0731 HemV-3 iron (III) ABC transporter, ATP-binding protein. (344 aa) |
| | lon | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (807 aa) |
| | Sdel_0868 | TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nam:NAMH_1151 septum site-determining protein MinD. (269 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (450 aa) |
| | Sdel_0883 | TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: abu:Abu_0891 putative 5- formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. (222 aa) |
| | Sdel_0885 | PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sun:SUN_1437 multidrug ABC transporter, ATP- binding protein. (590 aa) |
| | Sdel_0901 | CRISPR-associated helicase Cas3; KEGG: pin:Ping_1586 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR- associated HD domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase. (737 aa) |
| | Sdel_0922 | PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 putative transposase for insertion sequence element IS5376. (368 aa) |
| | Sdel_0923 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gme:Gmet_3281 transposase/IS protein. (273 aa) |
| | Sdel_0927 | KEGG: cjr:CJE1127 hypothetical protein. (186 aa) |
| | Sdel_0933 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gme:Gmet_3281 transposase/IS protein. (273 aa) |
| | Sdel_0934 | PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 putative transposase for insertion sequence element IS5376. (368 aa) |
| | Sdel_0942 | PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 putative transposase for insertion sequence element IS5376. (368 aa) |
| | Sdel_0943 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gme:Gmet_3281 transposase/IS protein. (273 aa) |
| | Sdel_0956 | KEGG: intracellular protein transport protein USO1. (1234 aa) |
| | Sdel_0969 | PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; KEGG: cff:CFF8240_0684 DNA translocase FtsK. (709 aa) |
| | Sdel_0972 | Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (790 aa) |
| | Sdel_0974 | PFAM: aminoglycoside phosphotransferase; Choline/ethanolamine kinase; KEGG: sun:SUN_0535 hypothetical protein. (244 aa) |
| | Sdel_0984 | Type I secretion system ATPase; KEGG: cha:CHAB381_1446 leukotoxin translocation ATP- binding protein LktB; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (700 aa) |
| | Sdel_1004 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gsu:GSU2594 transposase/IS protein. (272 aa) |
| | Sdel_1007 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gme:Gmet_3281 transposase/IS protein. (273 aa) |
| | Sdel_1008 | PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 putative transposase for insertion sequence element IS5376. (368 aa) |
| | Sdel_1021 | PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: cco:CCC13826_0703 adenylosuccinate lyase. (276 aa) |
| | Sdel_1023 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cco:CCC13826_1239 ABC-transporter ATP-binding protein. (240 aa) |
| | argG | KEGG: cco:CCC13826_1219 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (409 aa) |
| | Sdel_1031 | Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. (441 aa) |
| | Sdel_1037 | SMART: AAA ATPase; KEGG: cha:CHAB381_1055 hypothetical protein. (269 aa) |
| | Sdel_1039 | PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: cco:CCC13826_1231 L(+)-tartrate dehydratase subunit beta (L-TTD beta). (583 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (404 aa) |
| | Sdel_1046 | PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: nis:NIS_1093 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate--D-alanyl- D-alanine ligase. (476 aa) |
| | ddl | D-alanine/D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (344 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (186 aa) |
| | cysS | KEGG: abu:Abu_0245 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; tRNA synthetase class I (M); Belongs to the class-I aminoacyl-tRNA synthetase family. (466 aa) |
| | Sdel_1055 | PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cff:CFF8240_0787 lipid export ABC transport protein. (571 aa) |
| | sucC | succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (391 aa) |
| | gatB | glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (476 aa) |
| | Sdel_1153 | PFAM: ABC-1 domain protein; KEGG: tdn:Suden_0932 hypothetical protein. (511 aa) |
| | Sdel_1170 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1816 ABC transporter, ATP-binding protein. (610 aa) |
| | thiM | Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. (267 aa) |
| | thiL | Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. (274 aa) |
| | Sdel_1188 | PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: eic:NT01EI_2791 hypothetical protein. (339 aa) |
| | Sdel_1222 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0445 ATPase. (297 aa) |
| | Sdel_1231 | PFAM: Abortive phage infection; KEGG: nmu:Nmul_A2605 hypothetical protein. (567 aa) |
| | Sdel_1245 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gme:Gmet_3281 transposase/IS protein. (273 aa) |
| | Sdel_1246 | PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 putative transposase for insertion sequence element IS5376. (368 aa) |
| | Sdel_1254 | PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 putative transposase for insertion sequence element IS5376. (368 aa) |
| | Sdel_1255 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gme:Gmet_3281 transposase/IS protein. (273 aa) |
| | Sdel_1257 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gme:Gmet_3281 transposase/IS protein. (273 aa) |
| | Sdel_1258 | PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 putative transposase for insertion sequence element IS5376. (368 aa) |
| | Sdel_1262 | PFAM: AAA ATPase central domain protein; peptidase M41; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ccv:CCV52592_1068 putative cell division protease FtsH-like protein; Belongs to the AAA ATPase family. (553 aa) |
| | coaD | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (160 aa) |
| | tmk | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. (194 aa) |
| | hisS | KEGG: tdn:Suden_1130 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S). (402 aa) |
| | Sdel_1310 | KEGG: cco:CCC13826_0148 hypothetical protein. (783 aa) |
| | Sdel_1313 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_0866 oligopeptide ABC transporter, ATP-binding protein. (193 aa) |
| | proS | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] (567 aa) |
| | valS | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (876 aa) |
| | Sdel_1336 | TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: swd:Swoo_4871 molybdenum cofactor biosynthesis protein. (175 aa) |
| | nadE | NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. (267 aa) |
| | lpxK | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). (312 aa) |
| | argB | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (283 aa) |
| | dnaK | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (626 aa) |
| | Sdel_1369 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: cco:CCC13826_2025 bifunctional riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family. (293 aa) |
| | Sdel_1377 | KEGG: cju:C8J_0544 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; Belongs to the aspartokinase family. (400 aa) |
| | secA | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (859 aa) |
| | Sdel_1400 | PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: nis:NIS_0876 ATP-dependent Clp protease, ATP- binding subunit ClpB; Belongs to the ClpA/ClpB family. (856 aa) |
| | purC | KEGG: cla:Cla_0709 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase. (237 aa) |
| | purS | Phosphoribosylformylglycinamidine synthase, purS; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assi [...] (81 aa) |
| | purQ | Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist i [...] (223 aa) |
| | htpG | Heat shock protein Hsp90-like protein; Molecular chaperone. Has ATPase activity. (623 aa) |
| | Sdel_1410 | PFAM: UvrD/REP helicase; KEGG: ccv:CCV52592_1083 acyl carrier protein. (676 aa) |
| | ftsA | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. (457 aa) |
| | Sdel_1433 | PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: nis:NIS_1038 ABC transport system ATP-binding protein. (649 aa) |
| | Sdel_1435 | PFAM: protein of unknown function DUF59; KEGG: nis:NIS_1811 hypothetical protein. (99 aa) |
| | purL | Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist [...] (733 aa) |
| | Sdel_1500 | KEGG: noc:Noc_0060 ATP-binding region, ATPase-like. (291 aa) |
| | glyS | KEGG: nis:NIS_0732 glycyl-tRNA synthetase subunit beta; TIGRFAM: glycyl-tRNA synthetase, beta subunit; PFAM: glycyl-tRNA synthetase beta subunit. (683 aa) |
| | Sdel_1526 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abu:Abu_1039 ABC transporter, ATP-binding protein. (266 aa) |
| | Sdel_1535 | KEGG: sun:SUN_2266 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP- dependent DNA helicase, RecQ family; PFAM: HRDC domain protein; DEAD/DEAH box helicase domain protein; RQC domain; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein. (596 aa) |
| | Sdel_1538 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: pay:PAU_02922 putative atp-dependent rna helicase RhlE; Belongs to the DEAD box helicase family. (436 aa) |
| | Sdel_1556 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tdn:Suden_1348 ABC transporter-related protein. (245 aa) |
| | Sdel_1572 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS1265 ABC transporter ATP- binding/permease protein. (591 aa) |
| | Sdel_1573 | PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: wsu:WS1264 ABC transporter ATP-binding protein. (590 aa) |
| | acsA | acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. (648 aa) |
| | Sdel_1595 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (476 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (611 aa) |
| | uvrB | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (658 aa) |
| | ppk | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (705 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (989 aa) |
| | Sdel_1616 | TIGRFAM: FolC bifunctional protein; KEGG: tdn:Suden_1569 folylpolyglutamate synthetase. (383 aa) |
| | leuS | TIGRFAM: leucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase class I (M); KEGG: abu:Abu_0402 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (815 aa) |
| | Sdel_1624 | KEGG: abu:Abu_0445 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; Belongs to the AdoMet synthase family. (404 aa) |
| | Sdel_1626 | KEGG: nis:NIS_0380 ATP-dependent Clp protease, ATP- binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Belongs to the ClpA/ClpB family. (732 aa) |
| | Sdel_1630 | 4-diphosphocytidyl-2C-methyl-D-erythritolkinase; KEGG: tdn:Suden_0440 4-diphosphocytidyl-2-C-methyl- D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; Belongs to the GHMP kinase family. IspE subfamily. (258 aa) |
| | Sdel_1633 | PFAM: UvrD/REP helicase; KEGG: nis:NIS_1473 ATP-dependent DNA helicase UvrD. (681 aa) |
| | bioD | Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. (224 aa) |
| | glyQ | KEGG: nis:NIS_1511 glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit. (285 aa) |
| | Sdel_1661 | TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: cff:CFF8240_1054 glutamine synthetase, type I. (476 aa) |
| | Sdel_1663 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_1522 ABC transporter, ATP-binding protein. (231 aa) |
| | alaS | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (846 aa) |
| | Sdel_1696 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1475 ABC transporter, ATP-binding protein. (531 aa) |
| | Sdel_1706 | ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (375 aa) |
| | Sdel_1708 | PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: tdn:Suden_1488 response regulator receiver domain-containing protein. (295 aa) |
| | Sdel_1713 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: asu:Asuc_0320 maltose/maltodextrin transporter ATP-binding protein. (219 aa) |
| | Sdel_1716 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_2102 molybdenum ABC transporter, ATP- binding protein. (286 aa) |
| | Sdel_1725 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mei:Msip34_1220 ABC transporter related. (236 aa) |
| | Sdel_1739 | TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ppd:Ppro_3226 ATPase, P-type (transporting), HAD superfamily, subfamily IC. (900 aa) |
| | aroK | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (184 aa) |
| | Sdel_1755 | KEGG: cco:CCC13826_0775 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib. (321 aa) |
| | serS | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (414 aa) |
| | ftsH | ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (643 aa) |
| | Sdel_1768 | PFAM: lipopolysaccharide biosynthesis protein; KEGG: nam:NAMH_1653 chain length determinant protein. (297 aa) |
| | Sdel_1796 | PFAM: ATP dependent DNA ligase; KEGG: msu:MS0939 DNA ligase. (271 aa) |
| | Sdel_1804 | KEGG: abu:Abu_1801 hypothetical protein. (347 aa) |
| | Sdel_1807 | Hypothetical protein; KEGG: msu:MS1964 3-deoxy-D-manno-octulosonic-acid kinase. (252 aa) |
| | hldE | rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family. (472 aa) |
| | Sdel_1819 | TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sun:SUN_1930 heavy-metal transporting P-type ATPase. (806 aa) |
| | Sdel_1827 | Urea amidolyase related protein; KEGG: cps:CPS_1985 allophanate hydrolase domain- containing protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2. (310 aa) |
| | Sdel_1828 | PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: cps:CPS_1984 hypothetical protein. (227 aa) |
| | pxpA | LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (242 aa) |
| | accA | acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (312 aa) |
| | Sdel_1840 | UDP-N-acetylmuramoylalanine/D-glutamate ligase; KEGG: cff:CFF8240_1358 UDP-N-acetylmuramoyl-L- alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; Belongs to the MurCDEF family. (397 aa) |
| | Sdel_1841 | PFAM: AAA ATPase central domain protein; peptidase M41; SMART: AAA ATPase; KEGG: nis:NIS_1070 hypothetical protein. (806 aa) |
| | Sdel_1846 | PFAM: conserved hypothetical protein; KEGG: ttu:TERTU_2999 hypothetical protein. (231 aa) |
| | Sdel_1847 | PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; RimK domain protein ATP-grasp; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: abu:Abu_0605 acetyl CoA carboxylase, biotin carboxylase subunit. (481 aa) |
| | Sdel_1851 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: reu:Reut_A0517 helicase, C-terminal:type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N- terminal; Belongs to the DEAD box helicase family. (417 aa) |
| | pstB | Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (273 aa) |
| | queC | exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. (222 aa) |
| | Sdel_1883 | KEGG: abu:Abu_1538 PhoH family protein. (465 aa) |
| | Sdel_1895 | PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: tdn:Suden_1230 heat shock protein DnaJ-like. (91 aa) |
| | purT | Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family. (386 aa) |
| | Sdel_1910 | PFAM: UvrD/REP helicase; KEGG: tdn:Suden_0090 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (907 aa) |
| | carA | TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl- phosphate synthase small chain; KEGG: sun:SUN_0176 carbamoyl phosphate synthase small subunit; Belongs to the CarA family. (376 aa) |
| | murE | UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (437 aa) |
| | Sdel_1970 | KEGG: abu:Abu_0648 hypothetical protein. (357 aa) |
| | Sdel_1979 | KEGG: ccv:CCV52592_2075 thiamine biosynthesis protein:ExsB. (327 aa) |
| | Sdel_1998 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gme:Gmet_3281 transposase/IS protein. (273 aa) |
| | Sdel_1999 | PFAM: Integrase catalytic region; KEGG: lpc:LPC_1389 putative transposase for insertion sequence element IS5376. (368 aa) |
| | Sdel_2002 | PFAM: filamentation induced by cAMP protein Fic; KEGG: tdn:Suden_0227 filamentation induced by cAMP protein Fic. (375 aa) |
| | Sdel_2019 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tau:Tola_1246 ABC transporter related. (228 aa) |
| | Sdel_2027 | PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: abu:Abu_0418 two-component response regulator. (122 aa) |
| | selD | Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. (343 aa) |
| | Sdel_2057 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nam:NAMH_1311 sulfate/thiosulfate import ATP- binding protein CysA. (327 aa) |
| | Sdel_2063 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppd:Ppro_1463 ABC transporter related. (260 aa) |
| | Sdel_2069 | PFAM: periplasmic binding protein; KEGG: sat:SYN_01056 iron(III) dicitrate-binding protein. (340 aa) |
| | Sdel_2107 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_2371 ABC transporter related. (287 aa) |
| | Sdel_2114 | PFAM: DUF234 DEXX-box ATPase; KEGG: tdn:Suden_0136 hypothetical protein. (304 aa) |
| | Sdel_2125 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: tdn:Suden_1767 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. (583 aa) |
| | Sdel_2135 | PFAM: cobalamin synthesis protein P47K; KEGG: sfu:Sfum_3612 cobalamin synthesis protein, P47K. (596 aa) |
| | Sdel_2155 | Flagellar protein export ATPase FliI; KEGG: ccv:CCV52592_1495 flagellum-specific ATP synthase; TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase. (434 aa) |
| | Sdel_2161 | TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: ccv:CCV52592_1502 putative Mg chelatase-like protein. (511 aa) |
| | nnrE | Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family. (465 aa) |
| | Sdel_2166 | SMART: AAA ATPase; KEGG: cco:CCC13826_0805 3-dehydroquinate dehydratase (3-dehydroquinase; type IIDHQase). (413 aa) |
| | Sdel_2172 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tdn:Suden_1315 ABC transporter-related protein. (222 aa) |
| | mnmA | tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (339 aa) |
| | Sdel_2186 | PFAM: cell shape determining protein MreB/Mrl; KEGG: nam:NAMH_0040 cell shape determining protein MreB/Mrl. (336 aa) |
| | gltX | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (463 aa) |
| | Sdel_2198 | acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (443 aa) |
| | Sdel_2203 | PFAM: protein of unknown function DUF1566; KEGG: glo:Glov_2072 protein of unknown function DUF1566. (165 aa) |
| | Sdel_2216 | TIGRFAM: asparagine synthase (glutamine- hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II; KEGG: tdn:Suden_0186 asparagine synthase, glutamine- hydrolyzing. (596 aa) |
| | recA | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (347 aa) |
