STRINGSTRING
Sdel_0384 Sdel_0384 Sdel_0395 Sdel_0395 Sdel_0396 Sdel_0396 Sdel_0424 Sdel_0424 Sdel_0536 Sdel_0536 Sdel_0628 Sdel_0628 Sdel_1056 Sdel_1056 Sdel_1183 Sdel_1183 Sdel_1379 Sdel_1379 Sdel_0115 Sdel_0115 dapB dapB Sdel_0230 Sdel_0230 Sdel_0394 Sdel_0394
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sdel_0384KEGG: cco:CCC13826_0887 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (457 aa)
Sdel_0395KEGG: ccv:CCV52592_2205 fumarate reductase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (661 aa)
Sdel_0396TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cco:CCC13826_0424 fumarate reductase iron- sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (240 aa)
Sdel_0424PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cco:CCC13826_0513 enoyl-(acyl carrier protein) reductase. (273 aa)
Sdel_0536Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (312 aa)
Sdel_0628PFAM: conserved hypothetical protein; KEGG: abu:Abu_0048 hypothetical protein. (171 aa)
Sdel_1056Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (355 aa)
Sdel_1183KEGG: cla:Cla_0404 hypothetical protein. (225 aa)
Sdel_1379Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (351 aa)
Sdel_0115PFAM: conserved hypothetical protein; KEGG: abu:Abu_0048 hypothetical protein. (170 aa)
dapBDihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. (255 aa)
Sdel_0230PFAM: Prephenate dehydrogenase; KEGG: nis:NIS_0406 prephenate dehydrogenase. (275 aa)
Sdel_0394PFAM: Fumarate reductase respiratory complex; KEGG: abu:Abu_0301 fumarate reductase cytochrome b- 556 subunit. (260 aa)
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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