STRINGSTRING
Sdel_1872 Sdel_1872 leuS leuS Sdel_1824 Sdel_1824 Sdel_1973 Sdel_1973 Sdel_0171 Sdel_0171 Sdel_0299 Sdel_0299 ileS ileS gatC gatC Sdel_0814 Sdel_0814 Sdel_0896 Sdel_0896 Sdel_1229 Sdel_1229 proS proS valS valS nhaA nhaA Sdel_2063 Sdel_2063 Sdel_1846 Sdel_1846 Sdel_1549 Sdel_1549 Sdel_1553 Sdel_1553 Sdel_1554 Sdel_1554 Sdel_1567 Sdel_1567 Sdel_1583 Sdel_1583 Sdel_1584 Sdel_1584
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sdel_1872PFAM: PhoU family protein; KEGG: nis:NIS_0581 phosphate transport system regulator. (222 aa)
leuSTIGRFAM: leucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase class I (M); KEGG: abu:Abu_0402 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (815 aa)
Sdel_1824PFAM: protein of unknown function DUF152; KEGG: cco:CCC13826_0554 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. (224 aa)
Sdel_1973Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (718 aa)
Sdel_0171TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: wsu:WS0452 thioredoxin; Belongs to the thioredoxin family. (105 aa)
Sdel_0299PFAM: conserved hypothetical protein; KEGG: tdn:Suden_0709 hypothetical protein; Belongs to the LOG family. (244 aa)
ileSisoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (918 aa)
gatCglutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (96 aa)
Sdel_0814PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dds:Ddes_0989 ABC transporter related. (260 aa)
Sdel_0896TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: wsu:WS1648 hypothetical protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (158 aa)
Sdel_1229Ferritin Dps family protein; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (172 aa)
proSprolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] (567 aa)
valSvalyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (876 aa)
nhaANa+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family. (391 aa)
Sdel_2063PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppd:Ppro_1463 ABC transporter related. (260 aa)
Sdel_1846PFAM: conserved hypothetical protein; KEGG: ttu:TERTU_2999 hypothetical protein. (231 aa)
Sdel_1549PFAM: Ferritin Dps family protein; KEGG: hhe:HH0210 starvation-inducible DNA-binding protein Dps; Belongs to the Dps family. (145 aa)
Sdel_1553Small GTP-binding protein; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (822 aa)
Sdel_1554PFAM: FeoA family protein; KEGG: abu:Abu_1853 ferrous iron transport protein A. (74 aa)
Sdel_1567PFAM: Hemin uptake protein hemP; KEGG: cko:CKO_03737 hypothetical protein. (44 aa)
Sdel_1583Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (698 aa)
Sdel_1584PFAM: FeoA family protein; KEGG: sun:SUN_0804 ferrous iron transport protein A. (75 aa)
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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