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| | gyrB | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (770 aa) |
| | rlmN | Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (358 aa) |
| | rsmA | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (281 aa) |
| | rnj | Beta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (664 aa) |
| | Sdel_0065 | PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: cco:CCC13826_1885 putative peptide ABC transporter, permease protein; Belongs to the pseudouridine synthase RsuA family. (261 aa) |
| | Sdel_0066 | PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cco:CCC13826_1825 recombination factor protein RarA. (396 aa) |
| | Sdel_0069 | PFAM: protein of unknown function DUF218; KEGG: nam:NAMH_1317 hypothetical protein. (261 aa) |
| | Sdel_0073 | PFAM: Mannosyl-glycoprotein endo-beta-N- acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: cff:CFF8240_1770 mannosyl-glycoprotein endo- beta-N-acetylglucosamidase domain-containing protein. (239 aa) |
| | prfA | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (355 aa) |
| | rplT | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (117 aa) |
| | Sdel_0101 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS2022 ABC transporter ATP-binding protein. (244 aa) |
| | Sdel_0162 | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (222 aa) |
| | rsmI | Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (270 aa) |
| | Sdel_0210 | KEGG: cha:CHAB381_1305 twitching mobility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (399 aa) |
| | Sdel_0226 | KEGG: cha:CHAB381_1489 hypothetical protein. (122 aa) |
| | bamA | Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (745 aa) |
| | flhB | Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (353 aa) |
| | Sdel_0249 | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (125 aa) |
| | rimP | Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. (142 aa) |
| | Sdel_0293 | KEGG: cco:CCC13826_0367 flagellar biosynthesis regulator FlhF; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase. (423 aa) |
| | Sdel_0294 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ccv:CCV52592_0368 ParaA family ATPase. (290 aa) |
| | gyrA | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (846 aa) |
| | Sdel_0334 | KEGG: bch:Bcen2424_0454 phage protein. (524 aa) |
| | Sdel_0336 | Hypothetical protein; KEGG: cti:RALTA_B1244 putative aspartate/glutamate/hydantoin racemase. (278 aa) |
| | Sdel_0370 | PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ccv:CCV52592_0922 putative periplasmic protein. (365 aa) |
| | rsmG | Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. (189 aa) |
| | Sdel_0398 | PFAM: Dynamin family protein; GTP-binding protein HSR1-related; KEGG: abu:Abu_0297 ATP/GTP-binding protein. (674 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa) |
| | Sdel_0404 | PFAM: toluene tolerance family protein; KEGG: ccv:CCV52592_0587 toluene tolerance protein Ttg2D. (209 aa) |
| | Sdel_0405 | PFAM: VacJ family lipoprotein; KEGG: abu:Abu_1443 VacJ-like lipoprotein. (242 aa) |
| | Sdel_0409 | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (257 aa) |
| | rsfS | Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). Belongs to the Iojap/RsfS family. (293 aa) |
| | Sdel_0432 | KEGG: ccv:CCV52592_0256 hypothetical protein. (172 aa) |
| | prfB | Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. (364 aa) |
| | Sdel_0465 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: tdn:Suden_1945 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. (407 aa) |
| | Sdel_0480 | PFAM: cytochrome c assembly protein; KEGG: cff:CFF8240_0404 CcmF/CcyK/CcsA family cytochrome c biogenesis protein. (1045 aa) |
| | Sdel_0492 | UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (437 aa) |
| | obg | GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. (368 aa) |
| | rlmH | Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (151 aa) |
| | Sdel_0539 | KEGG: cco:CCC13826_0976 hypothetical protein. (290 aa) |
| | Sdel_0580 | Twitching motility protein; KEGG: ccv:CCV52592_0998 putative type II/IV secretion system protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (355 aa) |
| | lptD | Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (710 aa) |
| | Sdel_0639 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (326 aa) |
| | rlpA | Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (264 aa) |
| | engB | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. (200 aa) |
| | Sdel_0670 | KEGG: ccv:CCV52592_0450 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain. (607 aa) |
| | ybeY | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (140 aa) |
| | Sdel_0672 | KEGG: sun:SUN_1127 hypothetical protein. (337 aa) |
| | Sdel_0699 | PFAM: cytochrome c assembly protein; KEGG: wsu:WS0383 NrfI protein. (898 aa) |
| | Sdel_0703 | Conserved hypothetical protein; Respiratory sulfite reductase that catalyzes the reduction of sulfite to sulfide in a single step, consuming six electrons in the process; Belongs to the multiheme cytochrome c family. (690 aa) |
| | Sdel_0708 | PFAM: cytochrome c assembly protein; KEGG: wsu:WS0968 NrfI protein. (791 aa) |
| | Sdel_0750 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: gsu:GSU0189 ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. (463 aa) |
| | Sdel_0766 | PFAM: Relaxase/mobilization nuclease family protein; KEGG: sun:SUN_2446 DNA relaxase TraI. (521 aa) |
| | Sdel_0767 | Hypothetical protein. (185 aa) |
| | Sdel_0769 | Hypothetical protein. (105 aa) |
| | Sdel_0852 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: sun:SUN_1915 ATP-dependent DNA helicase RecG. (614 aa) |
| | fliW | Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. (130 aa) |
| | Sdel_0859 | TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: cco:CCC13826_1959 tRNA (guanine-N(1)-)- methyltransferase. (215 aa) |
| | Sdel_0873 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (135 aa) |
| | Sdel_0882 | PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; KEGG: abu:Abu_0890 putative lipoprotein thiredoxin. (183 aa) |
| | cas1 | CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (334 aa) |
| | cas2 | CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (103 aa) |
| | Sdel_0951 | KEGG: sun:SUN_0733 hypothetical protein. (492 aa) |
| | Sdel_0956 | KEGG: intracellular protein transport protein USO1. (1234 aa) |
| | Sdel_0967 | PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: nis:NIS_0825 DNA-binding protein HU; Belongs to the bacterial histone-like protein family. (92 aa) |
| | era | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. (296 aa) |
| | Sdel_1034 | KEGG: ccv:CCV52592_1970 hypothetical protein. (215 aa) |
| | Sdel_1036 | TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; KEGG: cff:CFF8240_1007 type II and III secretion system protein; Belongs to the bacterial secretin family. (506 aa) |
| | ddl | D-alanine/D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (344 aa) |
| | ruvA | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (186 aa) |
| | murJ | Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (469 aa) |
| | mltG | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (282 aa) |
| | fliP | Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (238 aa) |
| | glmU | UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. (433 aa) |
| | Sdel_1129 | PFAM: glycoside hydrolase family 3 domain protein; KEGG: cff:CFF8240_0777 glycosy hydrolase family protein. (345 aa) |
| | Sdel_1139 | TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: cff:CFF8240_0100 flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family. (614 aa) |
| | Sdel_1140 | KEGG: wsu:WS0260 hypothetical protein. (142 aa) |
| | Sdel_1142 | KEGG: cff:CFF8240_0097 hypothetical protein. (98 aa) |
| | Sdel_1144 | TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: nis:NIS_0997 DNA methylase. (191 aa) |
| | Sdel_1148 | TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: hhe:HH0791 flagellar protein FliS. (125 aa) |
| | Sdel_1191 | TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: nis:NIS_1695 hypothetical protein. (207 aa) |
| | Sdel_1231 | PFAM: Abortive phage infection; KEGG: nmu:Nmul_A2605 hypothetical protein. (567 aa) |
| | murA | UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (422 aa) |
| | Sdel_1310 | KEGG: cco:CCC13826_0148 hypothetical protein. (783 aa) |
| | Sdel_1355 | PFAM: Thioredoxin domain; cytochrome c biogenesis protein transmembrane region; KEGG: abu:Abu_2187 thiol:disulfide interchange protein DsbD. (577 aa) |
| | flhA | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (730 aa) |
| | Sdel_1370 | KEGG: nam:NAMH_1087 hemolysin A; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein. (238 aa) |
| | Sdel_1392 | KEGG: ccv:CCV52592_1832 hypothetical protein. (320 aa) |
| | Sdel_1394 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. (117 aa) |
| | Sdel_1410 | PFAM: UvrD/REP helicase; KEGG: ccv:CCV52592_1083 acyl carrier protein. (676 aa) |
| | Sdel_1416 | KEGG: sun:SUN_0982 hypothetical protein. (442 aa) |
| | rsmH | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (304 aa) |
| | ftsZ | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (371 aa) |
| | Sdel_1435 | PFAM: protein of unknown function DUF59; KEGG: nis:NIS_1811 hypothetical protein. (99 aa) |
| | Sdel_1495 | TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: rfe:RF_0334 hypothetical protein. (98 aa) |
| | Sdel_1525 | PFAM: pseudouridine synthase; KEGG: sun:SUN_0745 ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. (194 aa) |
| | Sdel_1535 | KEGG: sun:SUN_2266 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP- dependent DNA helicase, RecQ family; PFAM: HRDC domain protein; DEAD/DEAH box helicase domain protein; RQC domain; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein. (596 aa) |
| | Sdel_1538 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: pay:PAU_02922 putative atp-dependent rna helicase RhlE; Belongs to the DEAD box helicase family. (436 aa) |
| | Sdel_1595 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (476 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (611 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (989 aa) |
| | Sdel_1618 | KEGG: nis:NIS_1463 hypothetical protein. (171 aa) |
| | csrA | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (75 aa) |
| | Sdel_1633 | PFAM: UvrD/REP helicase; KEGG: nis:NIS_1473 ATP-dependent DNA helicase UvrD. (681 aa) |
| | rimM | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (179 aa) |
| | Sdel_1648 | KEGG: cco:CCC13826_1432 hypothetical protein. (81 aa) |
| | Sdel_1662 | TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: cff:CFF8240_1032 penicillin-binding protein 1A (PBP-1a) (PBP1a). (641 aa) |
| | murG | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (342 aa) |
| | Sdel_1706 | ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (375 aa) |
| | Sdel_1720 | PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: wsu:WS0721 penicillin-binding protein; Belongs to the peptidase S11 family. (309 aa) |
| | der | Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (477 aa) |
| | Sdel_1771 | PFAM: Glycosyl transferase, family 4, conserved region; KEGG: abu:Abu_0694 glycosyltransferase. (321 aa) |
| | Sdel_1795 | Nucleotide sugar dehydrogenase; KEGG: abu:Abu_0659 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase. (389 aa) |
| | Sdel_1815 | TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: nis:NIS_1450 D-glycero-D-manno-heptose 1,7- bisphosphate phosphatase. (169 aa) |
| | Sdel_1816 | SMART: Tetratricopeptide repeat; KEGG: ppd:Ppro_0054 TPR repeat-containing protein. (234 aa) |
| | mraY | phospho-N-acetylmuramoyl-pentapeptide-transferas e; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (354 aa) |
| | Sdel_1840 | UDP-N-acetylmuramoylalanine/D-glutamate ligase; KEGG: cff:CFF8240_1358 UDP-N-acetylmuramoyl-L- alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; Belongs to the MurCDEF family. (397 aa) |
| | Sdel_1851 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: reu:Reut_A0517 helicase, C-terminal:type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N- terminal; Belongs to the DEAD box helicase family. (417 aa) |
| | Sdel_1910 | PFAM: UvrD/REP helicase; KEGG: tdn:Suden_0090 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (907 aa) |
| | Sdel_1925 | KEGG: wsu:WS2054 hypothetical protein. (175 aa) |
| | Sdel_1926 | KEGG: nam:NAMH_1681 hypothetical protein. (144 aa) |
| | murE | UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (437 aa) |
| | Sdel_1940 | PFAM: nitrogen-fixing NifU domain protein; KEGG: nis:NIS_0251 hypothetical protein. (93 aa) |
| | rnc | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (227 aa) |
| | Sdel_2015 | PFAM: plasmid maintenance system killer; KEGG: nis:NIS_1330 plasmid stabilization system protein. (91 aa) |
| | uppP | Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (255 aa) |
| | Sdel_2125 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: tdn:Suden_1767 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. (583 aa) |
| | Sdel_2144 | PFAM: MltA domain protein; 3D domain protein; KEGG: tdn:Suden_1285 MltA. (356 aa) |
| | Sdel_2153 | Nitrogen-fixing NifU domain protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. (329 aa) |
| | Sdel_2154 | Cysteine desulfurase, NifS family; KEGG: wsu:WS2206 cysteine desulfurase; TIGRFAM: cysteine desulfurase, NifS family; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase. (396 aa) |
| | Sdel_2161 | TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: ccv:CCV52592_1502 putative Mg chelatase-like protein. (511 aa) |
| | Sdel_2210 | TIGRFAM: pseudaminic acid CMP-transferase; PFAM: acylneuraminate cytidylyltransferase; KEGG: abu:Abu_2245 acylneuraminate cytidylyltransferase. (232 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (694 aa) |
| | fliQ | Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (88 aa) |
| | murB | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (257 aa) |
| | Sdel_2245 | KEGG: wsu:WS1743 hypothetical protein. (180 aa) |
| | frr | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. (186 aa) |
| | Sdel_2286 | PFAM: LemA family protein; KEGG: nam:NAMH_1335 LemA protein. (185 aa) |
| | Sdel_2287 | TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: ccv:CCV52592_2046 GTP-binding protein TypA/BipA. (599 aa) |
| | Sdel_2288 | KEGG: cff:CFF8240_0010 hypothetical protein. (504 aa) |
| | Sdel_2289 | Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein. (229 aa) |
