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| | dnaX | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (546 aa) |
| | dnaA | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (441 aa) |
| | Sdel_0023 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0987 putative oligopeptide transporter. (272 aa) |
| | Sdel_0024 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0988 oligopeptide ABC transporter ATP- binding protein. (254 aa) |
| | Sdel_0032 | PFAM: SMC domain protein; SMART: AAA ATPase; KEGG: psb:Psyr_0419 hypothetical protein. (440 aa) |
| | pyrG | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. (546 aa) |
| | Sdel_0066 | PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cco:CCC13826_1825 recombination factor protein RarA. (396 aa) |
| | coaE | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. (201 aa) |
| | Sdel_0101 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS2022 ABC transporter ATP-binding protein. (244 aa) |
| | Sdel_0125 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0277 amino acid permease ATP-binding protein. (246 aa) |
| | Sdel_0130 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cco:CCC13826_1791 ATP-dependent DNA helicase PcrA. (253 aa) |
| | Sdel_0137 | PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: nis:NIS_0287 AAA family ATPase. (577 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (298 aa) |
| | clpX | ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (412 aa) |
| | Sdel_0194 | PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_3201 iron-sulfur cluster- binding/ATPase domain-containing protein. (292 aa) |
| | Sdel_0195 | PFAM: Cobyrinic acid ac-diamide synthase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_0748 MinD family ATPase. (288 aa) |
| | Sdel_0210 | KEGG: cha:CHAB381_1305 twitching mobility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (399 aa) |
| | infB | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (888 aa) |
| | Sdel_0293 | KEGG: cco:CCC13826_0367 flagellar biosynthesis regulator FlhF; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase. (423 aa) |
| | Sdel_0294 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ccv:CCV52592_0368 ParaA family ATPase. (290 aa) |
| | lepA | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (597 aa) |
| | Sdel_0320 | PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: ccv:CCV52592_1462 putative alkyl- dihydroxyacetone phosphate synthase. (385 aa) |
| | tuf | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (399 aa) |
| | fusA | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] (692 aa) |
| | metN | ABC transporter related protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (319 aa) |
| | Sdel_0397 | PFAM: Dynamin family protein; KEGG: abu:Abu_0298 ATP/GTP-binding protein. (789 aa) |
| | Sdel_0398 | PFAM: Dynamin family protein; GTP-binding protein HSR1-related; KEGG: abu:Abu_0297 ATP/GTP-binding protein. (674 aa) |
| | ruvB | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa) |
| | Sdel_0408 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_1535 ABC transporter, ATP-binding protein. (214 aa) |
| | gmk | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. (204 aa) |
| | rho | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (447 aa) |
| | Sdel_0454 | KEGG: ppd:Ppro_1326 hypothetical protein. (663 aa) |
| | Sdel_0465 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: tdn:Suden_1945 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. (407 aa) |
| | Sdel_0478 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cla:Cla_1114 branched-chain amino acid ABC transporter, ATP-binding protein. (255 aa) |
| | Sdel_0479 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cju:C8J_0951 high affinity branched-chain amino acid ABC transporter, ATP-binding protein. (231 aa) |
| | mutS2 | Smr protein/MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (733 aa) |
| | obg | GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. (368 aa) |
| | Sdel_0508 | PFAM: Cobyrinic acid ac-diamide synthase; KEGG: wsu:WS0509 ParA family protein. (261 aa) |
| | atpA | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. (501 aa) |
| | atpD | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (465 aa) |
| | Sdel_0524 | KEGG: tdn:Suden_1394 fis family transcriptional regulator. (254 aa) |
| | Sdel_0554 | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (938 aa) |
| | Sdel_0580 | Twitching motility protein; KEGG: ccv:CCV52592_0998 putative type II/IV secretion system protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (355 aa) |
| | Sdel_0624 | PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; KEGG: nis:NIS_0517 DNA mismatch repair ATPase MutS. (977 aa) |
| | Sdel_0642 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0146 cell division protein FtsE. (223 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (190 aa) |
| | Sdel_0658 | SMC domain protein; May be involved in recombinational repair of damaged DNA. (513 aa) |
| | engB | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. (200 aa) |
| | Sdel_0676 | TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: sun:SUN_1134 molybdopterin-guanine dinucleotide biosynthesis protein B. (165 aa) |
| | Sdel_0694 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0390 ABC transporter ATPase. (225 aa) |
| | ychF | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa) |
| | Sdel_0750 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: gsu:GSU0189 ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family. (463 aa) |
| | Sdel_0778 | PFAM: IstB domain protein ATP-binding protein; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein. (250 aa) |
| | Sdel_0785 | SMART: AAA ATPase; KEGG: sun:SUN_0582 hypothetical protein. (399 aa) |
| | Sdel_0793 | Type I secretion system ATPase; KEGG: cco:CCC13826_0891 hypothetical protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (718 aa) |
| | Sdel_0814 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dds:Ddes_0989 ABC transporter related. (260 aa) |
| | Sdel_0852 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: sun:SUN_1915 ATP-dependent DNA helicase RecG. (614 aa) |
| | lon | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (807 aa) |
| | Sdel_0864 | PFAM: DNA polymerase III delta; KEGG: sun:SUN_0430 DNA polymerase III subunit delta. (328 aa) |
| | Sdel_0868 | TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nam:NAMH_1151 septum site-determining protein MinD. (269 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (450 aa) |
| | ftsY | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components. (294 aa) |
| | Sdel_0885 | PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sun:SUN_1437 multidrug ABC transporter, ATP- binding protein. (590 aa) |
| | Sdel_0901 | CRISPR-associated helicase Cas3; KEGG: pin:Ping_1586 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR- associated HD domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase. (737 aa) |
| | Sdel_0914 | Hypothetical protein. (116 aa) |
| | Sdel_0923 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gme:Gmet_3281 transposase/IS protein. (273 aa) |
| | Sdel_0927 | KEGG: cjr:CJE1127 hypothetical protein. (186 aa) |
| | Sdel_0948 | PFAM: SMC domain protein; KEGG: sun:SUN_0726 DNA double-strand break repair protein. (789 aa) |
| | Sdel_0949 | KEGG: dma:DMR_23360 hypothetical protein. (603 aa) |
| | Sdel_0969 | PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; KEGG: cff:CFF8240_0684 DNA translocase FtsK. (709 aa) |
| | Sdel_0984 | Type I secretion system ATPase; KEGG: cha:CHAB381_1446 leukotoxin translocation ATP- binding protein LktB; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (700 aa) |
| | Sdel_1004 | PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: gsu:GSU2594 transposase/IS protein. (272 aa) |
| | Sdel_1023 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cco:CCC13826_1239 ABC-transporter ATP-binding protein. (240 aa) |
| | Sdel_1024 | PFAM: protein of unknown function UPF0079; KEGG: ccv:CCV52592_1981 hypothetical protein. (143 aa) |
| | Sdel_1031 | Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. (441 aa) |
| | era | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. (296 aa) |
| | Sdel_1037 | SMART: AAA ATPase; KEGG: cha:CHAB381_1055 hypothetical protein. (269 aa) |
| | Sdel_1039 | PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: cco:CCC13826_1231 L(+)-tartrate dehydratase subunit beta (L-TTD beta). (583 aa) |
| | Sdel_1045 | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. (702 aa) |
| | Sdel_1055 | PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cff:CFF8240_0787 lipid export ABC transport protein. (571 aa) |
| | Sdel_1098 | TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cco:CCC13826_1096 hydrogenase accessory protein HypB. (278 aa) |
| | Sdel_1113 | KEGG: ppd:Ppro_1326 hypothetical protein. (731 aa) |
| | Sdel_1170 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1816 ABC transporter, ATP-binding protein. (610 aa) |
| | Sdel_1188 | PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: eic:NT01EI_2791 hypothetical protein. (339 aa) |
| | Sdel_1222 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0445 ATPase. (297 aa) |
| | Sdel_1262 | PFAM: AAA ATPase central domain protein; peptidase M41; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ccv:CCV52592_1068 putative cell division protease FtsH-like protein; Belongs to the AAA ATPase family. (553 aa) |
| | tmk | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. (194 aa) |
| | Sdel_1304 | TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; KEGG: cco:CCC13826_0142 tRNA 2-selenouridine synthase; Belongs to the SelU family. (342 aa) |
| | Sdel_1313 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_0866 oligopeptide ABC transporter, ATP-binding protein. (193 aa) |
| | Sdel_1356 | PFAM: protein of unknown function DUF344; KEGG: cff:CFF8240_1088 PvdS. (293 aa) |
| | Sdel_1375 | KEGG: abu:Abu_1201 putative DNA polymerase III delta prime subunit HolB. (208 aa) |
| | secA | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (859 aa) |
| | Sdel_1400 | PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: nis:NIS_0876 ATP-dependent Clp protease, ATP- binding subunit ClpB; Belongs to the ClpA/ClpB family. (856 aa) |
| | Sdel_1410 | PFAM: UvrD/REP helicase; KEGG: ccv:CCV52592_1083 acyl carrier protein. (676 aa) |
| | Sdel_1413 | KEGG: nis:NIS_1565 hypothetical protein. (266 aa) |
| | Sdel_1416 | KEGG: sun:SUN_0982 hypothetical protein. (442 aa) |
| | Sdel_1419 | KEGG: tcx:Tcr_0083 hypothetical protein. (1215 aa) |
| | Sdel_1433 | PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: nis:NIS_1038 ABC transport system ATP-binding protein. (649 aa) |
| | Sdel_1526 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abu:Abu_1039 ABC transporter, ATP-binding protein. (266 aa) |
| | Sdel_1535 | KEGG: sun:SUN_2266 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP- dependent DNA helicase, RecQ family; PFAM: HRDC domain protein; DEAD/DEAH box helicase domain protein; RQC domain; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein. (596 aa) |
| | Sdel_1538 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: pay:PAU_02922 putative atp-dependent rna helicase RhlE; Belongs to the DEAD box helicase family. (436 aa) |
| | Sdel_1553 | Small GTP-binding protein; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (822 aa) |
| | Sdel_1556 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tdn:Suden_1348 ABC transporter-related protein. (245 aa) |
| | Sdel_1572 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS1265 ABC transporter ATP- binding/permease protein. (591 aa) |
| | Sdel_1573 | PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: wsu:WS1264 ABC transporter ATP-binding protein. (590 aa) |
| | Sdel_1583 | Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (698 aa) |
| | Sdel_1595 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (476 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (611 aa) |
| | uvrB | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (658 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (989 aa) |
| | Sdel_1626 | KEGG: nis:NIS_0380 ATP-dependent Clp protease, ATP- binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Belongs to the ClpA/ClpB family. (732 aa) |
| | Sdel_1633 | PFAM: UvrD/REP helicase; KEGG: nis:NIS_1473 ATP-dependent DNA helicase UvrD. (681 aa) |
| | bioD | Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. (224 aa) |
| | Sdel_1650 | KEGG: cco:CCC13826_1434 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase. (446 aa) |
| | Sdel_1663 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nis:NIS_1522 ABC transporter, ATP-binding protein. (231 aa) |
| | Sdel_1696 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1475 ABC transporter, ATP-binding protein. (531 aa) |
| | Sdel_1706 | ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (375 aa) |
| | Sdel_1713 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: asu:Asuc_0320 maltose/maltodextrin transporter ATP-binding protein. (219 aa) |
| | Sdel_1716 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_2102 molybdenum ABC transporter, ATP- binding protein. (286 aa) |
| | Sdel_1725 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mei:Msip34_1220 ABC transporter related. (236 aa) |
| | der | Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (477 aa) |
| | aroK | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. (184 aa) |
| | ftsH | ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (643 aa) |
| | Sdel_1841 | PFAM: AAA ATPase central domain protein; peptidase M41; SMART: AAA ATPase; KEGG: nis:NIS_1070 hypothetical protein. (806 aa) |
| | Sdel_1851 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: reu:Reut_A0517 helicase, C-terminal:type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N- terminal; Belongs to the DEAD box helicase family. (417 aa) |
| | pstB | Phosphate ABC transporter, ATPase subunit; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (273 aa) |
| | Sdel_1883 | KEGG: abu:Abu_1538 PhoH family protein. (465 aa) |
| | Sdel_1910 | PFAM: UvrD/REP helicase; KEGG: tdn:Suden_0090 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (907 aa) |
| | Sdel_1911 | KEGG: tdn:Suden_0088 hypothetical protein. (780 aa) |
| | purA | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (415 aa) |
| | Sdel_1973 | Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (718 aa) |
| | Sdel_2019 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tau:Tola_1246 ABC transporter related. (228 aa) |
| | Sdel_2057 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nam:NAMH_1311 sulfate/thiosulfate import ATP- binding protein CysA. (327 aa) |
| | Sdel_2063 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppd:Ppro_1463 ABC transporter related. (260 aa) |
| | Sdel_2083 | TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: nam:NAMH_1325 selenocysteine-specific translation elongation factor. (611 aa) |
| | Sdel_2107 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_2371 ABC transporter related. (287 aa) |
| | Sdel_2125 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: tdn:Suden_1767 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. (583 aa) |
| | Sdel_2135 | PFAM: cobalamin synthesis protein P47K; KEGG: sfu:Sfum_3612 cobalamin synthesis protein, P47K. (596 aa) |
| | Sdel_2155 | Flagellar protein export ATPase FliI; KEGG: ccv:CCV52592_1495 flagellum-specific ATP synthase; TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase. (434 aa) |
| | Sdel_2161 | TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: ccv:CCV52592_1502 putative Mg chelatase-like protein. (511 aa) |
| | Sdel_2166 | SMART: AAA ATPase; KEGG: cco:CCC13826_0805 3-dehydroquinate dehydratase (3-dehydroquinase; type IIDHQase). (413 aa) |
| | Sdel_2172 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tdn:Suden_1315 ABC transporter-related protein. (222 aa) |
| | recA | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (347 aa) |
| | Sdel_2287 | TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: ccv:CCV52592_2046 GTP-binding protein TypA/BipA. (599 aa) |
