STRINGSTRING
Sdel_0764 Sdel_0764 Sdel_2284 Sdel_2284 frr frr Sdel_2269 Sdel_2269 Sdel_2267 Sdel_2267 Sdel_2252 Sdel_2252 Sdel_2234 Sdel_2234 Sdel_2229 Sdel_2229 Sdel_2193 Sdel_2193 Sdel_2185 Sdel_2185 Sdel_2166 Sdel_2166 Sdel_2154 Sdel_2154 Sdel_2145 Sdel_2145 Sdel_2141 Sdel_2141 Sdel_2138 Sdel_2138 Sdel_2130 Sdel_2130 Sdel_2125 Sdel_2125 Sdel_2114 Sdel_2114 Sdel_2112 Sdel_2112 Sdel_2105 Sdel_2105 Sdel_2100 Sdel_2100 selA selA Sdel_2059 Sdel_2059 Sdel_2038 Sdel_2038 Sdel_2037 Sdel_2037 Sdel_2028 Sdel_2028 Sdel_2026 Sdel_2026 Sdel_2024 Sdel_2024 Sdel_2017 Sdel_2017 Sdel_2013 Sdel_2013 Sdel_1991 Sdel_1991 Sdel_1989 Sdel_1989 Sdel_1987 Sdel_1987 Sdel_1984 Sdel_1984 Sdel_1983 Sdel_1983 Sdel_1982 Sdel_1982 Sdel_1977 Sdel_1977 Sdel_1973 Sdel_1973 rpoA rpoA Sdel_1939 Sdel_1939 Sdel_1936 Sdel_1936 Sdel_1934 Sdel_1934 Sdel_1931 Sdel_1931 Sdel_1926 Sdel_1926 Sdel_1925 Sdel_1925 Sdel_1921 Sdel_1921 Sdel_1887 Sdel_1887 Sdel_1886 Sdel_1886 Sdel_1884 Sdel_1884 Sdel_1872 Sdel_1872 Sdel_1860 Sdel_1860 Sdel_1855 Sdel_1855 Sdel_1848 Sdel_1848 accA accA Sdel_1826 Sdel_1826 Sdel_1821 Sdel_1821 Sdel_1819 Sdel_1819 Sdel_1818 Sdel_1818 Sdel_1794 Sdel_1794 Sdel_1781 Sdel_1781 Sdel_1772 Sdel_1772 Sdel_1768 Sdel_1768 ftsH ftsH leuA leuA serS serS Sdel_1744 Sdel_1744 Sdel_1732 Sdel_1732 Sdel_1731 Sdel_1731 Sdel_1727 Sdel_1727 Sdel_1724 Sdel_1724 Sdel_1709 Sdel_1709 Sdel_1708 Sdel_1708 Sdel_1682 Sdel_1682 Sdel_1671 Sdel_1671 alaS alaS Sdel_1656 Sdel_1656 Sdel_1653 Sdel_1653 Sdel_1634 Sdel_1634 Sdel_1626 Sdel_1626 Sdel_1617 Sdel_1617 Sdel_1615 Sdel_1615 mfd mfd Sdel_1601 Sdel_1601 Sdel_1595 Sdel_1595 Sdel_1583 Sdel_1583 Sdel_1581 Sdel_1581 Sdel_1553 Sdel_1553 rpoD rpoD Sdel_1539 Sdel_1539 Sdel_1501 Sdel_1501 Sdel_1491 Sdel_1491 Sdel_1486 Sdel_1486 Sdel_1465 Sdel_1465 Sdel_1456 Sdel_1456 tatB tatB Sdel_1451 Sdel_1451 purL purL Sdel_1433 Sdel_1433 Sdel_1432 Sdel_1432 bioA bioA Sdel_1423 Sdel_1423 Sdel_1422 Sdel_1422 Sdel_1419 Sdel_1419 Sdel_1417 Sdel_1417 Sdel_1409 Sdel_1409 htpG htpG Sdel_1401 Sdel_1401 Sdel_1400 Sdel_1400 secA secA Sdel_1383 Sdel_1383 Sdel_1381 Sdel_1381 Sdel_1367 Sdel_1367 Sdel_1366 Sdel_1366 grpE grpE dnaK dnaK Sdel_1349 Sdel_1349 valS valS proS proS Sdel_1316 Sdel_1316 Sdel_1310 Sdel_1310 Sdel_1293 Sdel_1293 Sdel_1279 Sdel_1279 Sdel_1264 Sdel_1264 Sdel_1252 Sdel_1252 Sdel_1240 Sdel_1240 Sdel_1233 Sdel_1233 Sdel_1217 Sdel_1217 Sdel_1216 Sdel_1216 Sdel_1214 Sdel_1214 Sdel_1211 Sdel_1211 Sdel_1205 Sdel_1205 Sdel_1202 Sdel_1202 Sdel_1193 Sdel_1193 Sdel_1189 Sdel_1189 Sdel_1179 Sdel_1179 Sdel_1170 Sdel_1170 Sdel_1166 Sdel_1166 Sdel_1164 Sdel_1164 Sdel_1148 Sdel_1148 Sdel_1147 Sdel_1147 Sdel_1146 Sdel_1146 Sdel_1140 Sdel_1140 Sdel_1139 Sdel_1139 Sdel_1117 Sdel_1117 Sdel_1110 Sdel_1110 Sdel_1097 Sdel_1097 Sdel_1089 Sdel_1089 Sdel_1079 Sdel_1079 Sdel_1074 Sdel_1074 Sdel_1073 Sdel_1073 Sdel_1056 Sdel_1056 cysS cysS Sdel_1052 Sdel_1052 Sdel_1049 Sdel_1049 Sdel_1046 Sdel_1046 Sdel_1045 Sdel_1045 Sdel_1043 Sdel_1043 Sdel_1040 Sdel_1040 Sdel_1031 Sdel_1031 Sdel_1022 Sdel_1022 Sdel_0989 Sdel_0989 Sdel_0985 Sdel_0985 Sdel_0983 Sdel_0983 Sdel_0982 Sdel_0982 Sdel_0978 Sdel_0978 Sdel_0977 Sdel_0977 Sdel_0969 Sdel_0969 Sdel_0968 Sdel_0968 Sdel_0960 Sdel_0960 Sdel_0956 Sdel_0956 Sdel_0948 Sdel_0948 Sdel_0912 Sdel_0912 Sdel_0908 Sdel_0908 Sdel_0902 Sdel_0902 Sdel_0885 Sdel_0885 rny rny lon lon Sdel_0841 Sdel_0841 metE metE Sdel_0822 Sdel_0822 Sdel_0818 Sdel_0818 Sdel_0795 Sdel_0795 Sdel_0794 Sdel_0794 Sdel_0790 Sdel_0790 Sdel_0766 Sdel_0766 Sdel_0761 Sdel_0761 Sdel_0752 Sdel_0752 Sdel_0748 Sdel_0748 ychF ychF Sdel_0723 Sdel_0723 Sdel_0711 Sdel_0711 Sdel_0704 Sdel_0704 Sdel_0688 Sdel_0688 Sdel_0687 Sdel_0687 Sdel_0674 Sdel_0674 metG metG Sdel_0659 Sdel_0659 Sdel_0658 Sdel_0658 Sdel_0644 Sdel_0644 Sdel_0630 Sdel_0630 Sdel_0618 Sdel_0618 Sdel_0617 Sdel_0617 Sdel_0598 Sdel_0598 Sdel_0593 Sdel_0593 uvrC uvrC Sdel_0588 Sdel_0588 Sdel_0579 Sdel_0579 mntP mntP Sdel_0535 Sdel_0535 Sdel_0534 Sdel_0534 Sdel_0522 Sdel_0522 atpG atpG atpF atpF Sdel_0510 Sdel_0510 Sdel_0509 Sdel_0509 Sdel_0499 Sdel_0499 Sdel_0496 Sdel_0496 mutS2 mutS2 Sdel_0488 Sdel_0488 gatA gatA Sdel_0481 Sdel_0481 Sdel_0462 Sdel_0462 Sdel_0460 Sdel_0460 Sdel_0452 Sdel_0452 Sdel_0447 Sdel_0447 prfB prfB Sdel_0432 Sdel_0432 Sdel_0423 Sdel_0423 Sdel_0397 Sdel_0397 Sdel_0395 Sdel_0395 Sdel_0386 Sdel_0386 Sdel_0367 Sdel_0367 Sdel_0365 Sdel_0365 Sdel_0363 Sdel_0363 rpoB rpoB Sdel_0343 Sdel_0343 Sdel_0334 Sdel_0334 gyrA gyrA Sdel_0310 Sdel_0310 Sdel_0297 Sdel_0297 Sdel_0295 Sdel_0295 Sdel_0293 Sdel_0293 Sdel_0288 Sdel_0288 flhB flhB Sdel_0235 Sdel_0235 Sdel_0234 Sdel_0234 Sdel_0220 Sdel_0220 Sdel_0219 Sdel_0219 Sdel_0218 Sdel_0218 Sdel_0216 Sdel_0216 lysA lysA Sdel_0205 Sdel_0205 Sdel_0188 Sdel_0188 Sdel_0179 Sdel_0179 Sdel_0156 Sdel_0156 Sdel_0137 Sdel_0137 Sdel_0113 Sdel_0113 Sdel_0112 Sdel_0112 Sdel_0107 Sdel_0107 Sdel_0100 Sdel_0100 Sdel_0098 Sdel_0098 Sdel_0088 Sdel_0088 Sdel_0067 Sdel_0067 Sdel_0066 Sdel_0066 rnj rnj Sdel_0052 Sdel_0052 Sdel_0042 Sdel_0042 Sdel_0031 Sdel_0031 Sdel_0016 Sdel_0016 Sdel_0013 Sdel_0013 Sdel_0008 Sdel_0008 dnaA dnaA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Sdel_0764Hypothetical protein. (227 aa)
Sdel_2284Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (150 aa)
frrRibosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. (186 aa)
Sdel_2269KEGG: nis:NIS_1836 hypothetical protein. (515 aa)
Sdel_2267KEGG: cff:CFF8240_0144 hypothetical protein. (406 aa)
Sdel_2252PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: tdn:Suden_0123 hypothetical protein. (441 aa)
Sdel_2234KEGG: ccv:CCV52592_0614 hypothetical protein. (92 aa)
Sdel_2229Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (481 aa)
Sdel_2193Diguanylate cyclase; KEGG: abu:Abu_0455 two-component sensor histidine kinase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase HAMP region domain protein. (1196 aa)
Sdel_2185KEGG: wsu:WS1025 hypothetical protein. (429 aa)
Sdel_2166SMART: AAA ATPase; KEGG: cco:CCC13826_0805 3-dehydroquinate dehydratase (3-dehydroquinase; type IIDHQase). (413 aa)
Sdel_2154Cysteine desulfurase, NifS family; KEGG: wsu:WS2206 cysteine desulfurase; TIGRFAM: cysteine desulfurase, NifS family; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase. (396 aa)
Sdel_2145Hypothetical protein. (56 aa)
Sdel_2141PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_1331 methyl-accepting chemotaxis sensory transducer. (708 aa)
Sdel_2138PAS sensor protein; KEGG: nam:NAMH_0746 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein. (516 aa)
Sdel_2130PFAM: histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: abu:Abu_1161 two-component sensor histidine kinase. (418 aa)
Sdel_2125PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: tdn:Suden_1767 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. (583 aa)
Sdel_2114PFAM: DUF234 DEXX-box ATPase; KEGG: tdn:Suden_0136 hypothetical protein. (304 aa)
Sdel_2112KEGG: cha:CHAB381_0803 hypothetical protein. (497 aa)
Sdel_2105KEGG: fph:Fphi_1084 aconitate hydratase. (393 aa)
Sdel_2100PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sbm:Shew185_0334 histidine ammonia-lyase. (506 aa)
selAL-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (445 aa)
Sdel_2059PFAM: regulatory protein LysR; KEGG: cco:CCC13826_0212 CBS domain-containing protein. (245 aa)
Sdel_2038PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tdn:Suden_0316 histidine kinase. (473 aa)
Sdel_2037PFAM: sulfatase; protein of unknown function DUF1705; KEGG: wsu:WS0643 hypothetical protein. (518 aa)
Sdel_2028PAS sensor protein; KEGG: abu:Abu_0420 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein. (569 aa)
Sdel_2026PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: tdn:Suden_0283 methyl-accepting chemotaxis sensory transducer. (440 aa)
Sdel_2024PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: wsu:WS0739 hypothetical protein. (439 aa)
Sdel_2017KEGG: pat:Patl_1844 hypothetical protein. (151 aa)
Sdel_2013KEGG: nis:NIS_0569 hypothetical protein. (414 aa)
Sdel_1991PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: wsu:WS0094 methyl-accepting chemotaxis protein II. (661 aa)
Sdel_1989PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein; Signal transducing histidine kinase homodimeric; SMART: ATP-binding region ATPase domain protein; CheW domain protein; Hpt domain protein; KEGG: tdn:Suden_0974 CheA signal transduction histidine kinases. (678 aa)
Sdel_1987PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: glo:Glov_1309 histidine kinase. (300 aa)
Sdel_1984PAS sensor protein; KEGG: tcx:Tcr_1924 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. (506 aa)
Sdel_1983PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: wsu:WS1376 CheY and CheB genes (chemotaxis protein). (428 aa)
Sdel_1982KEGG: geo:Geob_2297 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (335 aa)
Sdel_1977KEGG: ccv:CCV52592_2067 TPR repeat-containing protein. (347 aa)
Sdel_1973Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (718 aa)
rpoADNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (337 aa)
Sdel_1939KEGG: nis:NIS_0252 hypothetical protein. (187 aa)
Sdel_1936Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (105 aa)
Sdel_1934PFAM: Polyprenyl synthetase; KEGG: wsu:WS1679 geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. (286 aa)
Sdel_1931PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_2035 putative transducer. (621 aa)
Sdel_1926KEGG: nam:NAMH_1681 hypothetical protein. (144 aa)
Sdel_1925KEGG: wsu:WS2054 hypothetical protein. (175 aa)
Sdel_1921PAS sensor protein; KEGG: nis:NIS_1620 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein. (407 aa)
Sdel_1887TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cjj:CJJ81176_1237 hemerythrin family non-heme iron protein. (141 aa)
Sdel_1886TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ypi:YpsIP31758_3586 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (379 aa)
Sdel_1884TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: yen:YE0445 outer membrane efflux lipoprotein. (464 aa)
Sdel_1872PFAM: PhoU family protein; KEGG: nis:NIS_0581 phosphate transport system regulator. (222 aa)
Sdel_1860PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: ccv:CCV52592_1331 methyl-accepting chemotaxis sensory transducer. (533 aa)
Sdel_1855Hypothetical protein; KEGG: vsp:VS_II1084 methyl-accepting chemotaxis protein. (307 aa)
Sdel_1848KEGG: abu:Abu_1549 CiaB protein. (621 aa)
accAacetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (312 aa)
Sdel_1826PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: nam:NAMH_1064 mcp-signal transduction protein. (650 aa)
Sdel_1821KEGG: pin:Ping_2702 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; NMT1/THI5 like domain protein; SMART: GGDEF domain containing protein. (821 aa)
Sdel_1819TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sun:SUN_1930 heavy-metal transporting P-type ATPase. (806 aa)
Sdel_1818TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3- type; KEGG: nis:NIS_1451 hypothetical protein. (79 aa)
Sdel_1794KEGG: mmw:Mmwyl1_0798 AsnC family transcriptional regulator. (111 aa)
Sdel_1781Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: fph:Fphi_1260 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (366 aa)
Sdel_1772PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: bba:Bd1697 UDP-N-acetyl-D-quinovosamine 4- epimerase. (285 aa)
Sdel_1768PFAM: lipopolysaccharide biosynthesis protein; KEGG: nam:NAMH_1653 chain length determinant protein. (297 aa)
ftsHATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (643 aa)
leuA2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (520 aa)
serSseryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (414 aa)
Sdel_1744Hypothetical protein. (47 aa)
Sdel_1732KEGG: tdn:Suden_0766 hypothetical protein. (129 aa)
Sdel_1731Hypothetical protein; KEGG: wsu:WS1376 CheY and CheB genes (chemotaxis protein). (477 aa)
Sdel_1727Type I secretion outer membrane protein, TolC family; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. (452 aa)
Sdel_1724PFAM: protein of unknown function DUF214; KEGG: mei:Msip34_1219 protein of unknown function DUF214. (406 aa)
Sdel_1709PFAM: ATP-sulfurylase; KEGG: nis:NIS_0593 sulfate adenylyltransferase. (397 aa)
Sdel_1708PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: tdn:Suden_1488 response regulator receiver domain-containing protein. (295 aa)
Sdel_1682PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: similar to histidine kinase. (551 aa)
Sdel_1671Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: ccv:CCV52592_0690 penicillin-binding protein. (599 aa)
alaSalanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (846 aa)
Sdel_1656KEGG: ccv:CCV52592_0282 hypothetical protein. (163 aa)
Sdel_1653PFAM: protein of unknown function DUF164; KEGG: ccv:CCV52592_0672 hypothetical protein. (239 aa)
Sdel_1634PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: tdn:Suden_0436 LysR family transcriptional regulator. (307 aa)
Sdel_1626KEGG: nis:NIS_0380 ATP-dependent Clp protease, ATP- binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Belongs to the ClpA/ClpB family. (732 aa)
Sdel_1617KEGG: cff:CFF8240_0733 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (514 aa)
Sdel_1615PFAM: Peptidase M23; KEGG: cff:CFF8240_0735 M24/M37 family peptidase. (299 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (989 aa)
Sdel_1601KEGG: cco:CCC13826_0675 ABC transporter. (77 aa)
Sdel_1595Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (476 aa)
Sdel_1583Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (698 aa)
Sdel_1581Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cla:Cla_0897 peptidyl-arginine deiminase family protein; Belongs to the agmatine deiminase family. (330 aa)
Sdel_1553Small GTP-binding protein; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (822 aa)
rpoDRNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (617 aa)
Sdel_1539Hypothetical protein. (155 aa)
Sdel_1501PFAM: protein of unknown function DUF450; N-6 DNA methylase; KEGG: sun:SUN_2234 hypothetical protein. (974 aa)
Sdel_1491PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: wsu:WS1520 methyl-accepting chemotaxis protein. (393 aa)
Sdel_1486DNA-damage-inducible protein; KEGG: ecg:E2348C_0995 predicted DNA-damage- inducible protein. (269 aa)
Sdel_1465PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: tdn:Suden_1845 hypothetical protein. (358 aa)
Sdel_1456PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: tdn:Suden_1267 RNA-metabolising metallo-beta- lactamase. (464 aa)
tatBTwin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. (147 aa)
Sdel_1451KEGG: mmb:Mmol_1419 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein. (629 aa)
purLPhosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist [...] (733 aa)
Sdel_1433PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: nis:NIS_1038 ABC transport system ATP-binding protein. (649 aa)
Sdel_1432PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; KEGG: wsu:WS1923 putative methyl-accepting chemotaxis protein. (546 aa)
bioAAdenosylmethionine-8-amino-7-oxononanoateaminotr ansferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. (434 aa)
Sdel_1423KEGG: nis:NIS_1028 hypothetical protein. (94 aa)
Sdel_1422PFAM: protein of unknown function DUF195; KEGG: tdn:Suden_0237 hypothetical protein. (428 aa)
Sdel_1419KEGG: tcx:Tcr_0083 hypothetical protein. (1215 aa)
Sdel_1417PFAM: NLP/P60 protein; KEGG: cco:CCC13826_1076 DNA gyrase subunit A. (666 aa)
Sdel_1409PFAM: protein of unknown function DUF255; KEGG: sun:SUN_0115 hypothetical protein. (581 aa)
htpGHeat shock protein Hsp90-like protein; Molecular chaperone. Has ATPase activity. (623 aa)
Sdel_1401KEGG: nis:NIS_0875 protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family. (439 aa)
Sdel_1400PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: nis:NIS_0876 ATP-dependent Clp protease, ATP- binding subunit ClpB; Belongs to the ClpA/ClpB family. (856 aa)
secAPreprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (859 aa)
Sdel_1383Protease Do; KEGG: cff:CFF8240_0764 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family. (472 aa)
Sdel_1381PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ccv:CCV52592_1862 putative heat shock protein HspR. (124 aa)
Sdel_1367Hypothetical protein; KEGG: cco:CCC13826_2037 cell division protein. (88 aa)
Sdel_1366KEGG: cco:CCC13826_2036 hypothetical protein. (341 aa)
grpEGrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] (186 aa)
dnaKChaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (626 aa)
Sdel_1349PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cff:CFF8240_1079 WbgX protein; Belongs to the DegT/DnrJ/EryC1 family. (377 aa)
valSvalyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (876 aa)
proSprolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] (567 aa)
Sdel_1316PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: mmw:Mmwyl1_3912 methyl-accepting chemotaxis sensory transducer. (704 aa)
Sdel_1310KEGG: cco:CCC13826_0148 hypothetical protein. (783 aa)
Sdel_1293KEGG: nam:NAMH_0023 hypothetical protein. (81 aa)
Sdel_1279PFAM: Queuosine synthesis-like; KEGG: wsu:WS0138 ATP-utilizing protein of the PP- loop superfamily. (261 aa)
Sdel_1264PFAM: MscS Mechanosensitive ion channel; KEGG: ccv:CCV52592_1066 mechanosensitive ion channel family protein. (536 aa)
Sdel_1252KEGG: hypothetical protein. (395 aa)
Sdel_1240KEGG: tdn:Suden_0937 hypothetical protein. (112 aa)
Sdel_1233PAS sensor protein; KEGG: abu:Abu_1730 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; ATP-binding region ATPase domain protein. (394 aa)
Sdel_1217PFAM: OmpA/MotB domain protein; KEGG: ccv:CCV52592_0111 putative chemotaxis protein MotB. (385 aa)
Sdel_1216KEGG: cff:CFF8240_0516 hypothetical protein. (387 aa)
Sdel_1214PFAM: CHAD domain containing protein; KEGG: ccv:CCV52592_1673 CHAD domain-contain protein. (292 aa)
Sdel_1211KEGG: sfr:Sfri_1085 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (381 aa)
Sdel_1205PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: pca:Pcar_0439 methyl-accepting chemotaxis protein (MCP). (713 aa)
Sdel_1202PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: wsu:WS0929 methyl-accepting chemotaxis protein. (380 aa)
Sdel_1193KEGG: nis:NIS_1693 hypothetical protein. (457 aa)
Sdel_1189PFAM: aminotransferase class I and II; KEGG: msu:MS1248 AvtA protein. (376 aa)
Sdel_1179PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: wsu:WS0658 two component sensor kinase. (740 aa)
Sdel_1170PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1816 ABC transporter, ATP-binding protein. (610 aa)
Sdel_1166TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: wsu:WS0768 acriflavin resistance A precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (383 aa)
Sdel_1164TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: wsu:WS0771 putative outer membrane channel protein. (473 aa)
Sdel_1148TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS; KEGG: hhe:HH0791 flagellar protein FliS. (125 aa)
Sdel_1147Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (554 aa)
Sdel_1146PFAM: flagellar protein FlaG protein; KEGG: cff:CFF8240_0093 flagellar protein FlaG. (118 aa)
Sdel_1140KEGG: wsu:WS0260 hypothetical protein. (142 aa)
Sdel_1139TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: cff:CFF8240_0100 flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family. (614 aa)
Sdel_1117KEGG: hypothetical protein. (195 aa)
Sdel_1110KEGG: cco:CCC13826_2155 diacylglycerol kinase. (171 aa)
Sdel_1097TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cla:Cla_0790 hydrogenase assembly chaperone HypC. (89 aa)
Sdel_1089KEGG: son:SO_2629 isocitrate dehydrogenase, NADP- dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; Belongs to the monomeric-type IDH family. (745 aa)
Sdel_1079PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: sun:SUN_0722 transcription accessory protein. (704 aa)
Sdel_1074KEGG: tcx:Tcr_1007 hypothetical protein. (203 aa)
Sdel_1073PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_2035 putative transducer. (633 aa)
Sdel_1056Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (355 aa)
cysSKEGG: abu:Abu_0245 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; tRNA synthetase class I (M); Belongs to the class-I aminoacyl-tRNA synthetase family. (466 aa)
Sdel_1052PFAM: protein of unknown function DUF342; KEGG: cff:CFF8240_0806 hypothetical protein. (642 aa)
Sdel_1049Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (74 aa)
Sdel_1046PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: nis:NIS_1093 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate--D-alanyl- D-alanine ligase. (476 aa)
Sdel_1045Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. (702 aa)
Sdel_1043PFAM: Protein of unknown function YOR215C, mitochondrial; KEGG: nis:NIS_0988 GatB/YqeY domain-containing protein. (148 aa)
Sdel_1040PFAM: Type II secretion system F domain; KEGG: ccv:CCV52592_1963 type II secretion system protein. (413 aa)
Sdel_1031Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. (441 aa)
Sdel_1022RNA polymerase sigma-54 factor, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (423 aa)
Sdel_0989PFAM: Ankyrin; KEGG: cha:CHAB381_1161 ankyrin repeat-containing protein. (412 aa)
Sdel_0985PFAM: outer membrane efflux protein; KEGG: cha:CHAB381_1442 outer membrane efflux protein. (435 aa)
Sdel_0983PFAM: secretion protein HlyD family protein; KEGG: cha:CHAB381_1445 putative membrane-fusion protein. (439 aa)
Sdel_0982PFAM: domain of unknown function DUF1745; FIST C domain; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: mmw:Mmwyl1_2918 methyl-accepting chemotaxis sensory transducer. (666 aa)
Sdel_0978KEGG: hhe:HH0223 hypothetical protein. (232 aa)
Sdel_0977PFAM: outer membrane efflux protein; KEGG: abu:Abu_0815 outer membrane efflux protein. (410 aa)
Sdel_0969PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; KEGG: cff:CFF8240_0684 DNA translocase FtsK. (709 aa)
Sdel_0968Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (801 aa)
Sdel_0960KEGG: hypothetical protein. (320 aa)
Sdel_0956KEGG: intracellular protein transport protein USO1. (1234 aa)
Sdel_0948PFAM: SMC domain protein; KEGG: sun:SUN_0726 DNA double-strand break repair protein. (789 aa)
Sdel_0912PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; KEGG: ajs:Ajs_1044 response regulator receiver modulated metal dependent phosphohydrolase. (371 aa)
Sdel_0908PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: nam:NAMH_0210 exonuclease. (292 aa)
Sdel_0902CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (163 aa)
Sdel_0885PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sun:SUN_1437 multidrug ABC transporter, ATP- binding protein. (590 aa)
rnyYmdA/YtgF protein; Endoribonuclease that initiates mRNA decay. (505 aa)
lonATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (807 aa)
Sdel_0841KEGG: cco:CCC13826_1609 hypothetical protein. (110 aa)
metE5-methyltetrahydropteroyltriglutamate/homocystei neS-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. (731 aa)
Sdel_0822KEGG: ccv:CCV52592_0332 membrane protein. (310 aa)
Sdel_0818PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: wsu:WS0949 MCP domain-containing signal transducer. (590 aa)
Sdel_0795PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: cco:CCC13826_0894 putative outer membrane component of efflux system. (202 aa)
Sdel_0794TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: cco:CCC13826_0892 acriflavine resistance protein. (440 aa)
Sdel_0790TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cco:CCC13826_0888 ComEC/Rec2 family protein. (440 aa)
Sdel_0766PFAM: Relaxase/mobilization nuclease family protein; KEGG: sun:SUN_2446 DNA relaxase TraI. (521 aa)
Sdel_0761TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: avi:Avi_9655 P-type conjugative transfer protein TrbJ. (258 aa)
Sdel_0752PFAM: protein of unknown function DUF28; KEGG: tdn:Suden_1389 hypothetical protein. (236 aa)
Sdel_0748PAS sensor protein; KEGG: nam:NAMH_0747 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; response regulator receiver; PAC repeat-containing protein; PAS domain containing protein. (647 aa)
ychFGTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa)
Sdel_0723KEGG: vvy:VV1888 hypothetical protein. (232 aa)
Sdel_0711KEGG: wsu:WS1180 hypothetical protein. (459 aa)
Sdel_0704PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: wsu:WS0378 putative two-component sensor. (471 aa)
Sdel_0688Hypothetical protein; KEGG: mmw:Mmwyl1_1383 methyl-accepting chemotaxis sensory transducer. (306 aa)
Sdel_0687PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; KEGG: abu:Abu_1637 two-component sensor histidine kinase. (813 aa)
Sdel_0674KEGG: sun:SUN_1132 hypothetical protein. (65 aa)
metGmethionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (642 aa)
Sdel_0659KEGG: tdn:Suden_1780 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver. (417 aa)
Sdel_0658SMC domain protein; May be involved in recombinational repair of damaged DNA. (513 aa)
Sdel_0644PFAM: Peptidase M23; KEGG: cff:CFF8240_1215 M24/M37 family peptidase. (408 aa)
Sdel_0630KEGG: nis:NIS_0556 hypothetical protein. (144 aa)
Sdel_0618PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: tdn:Suden_0878 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (268 aa)
Sdel_0617PFAM: outer membrane efflux protein; KEGG: tdn:Suden_0879 outer membrane efflux protein. (447 aa)
Sdel_0598PFAM: RDD domain containing protein; KEGG: ccv:CCV52592_0950 RDD protein. (151 aa)
Sdel_0593L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (485 aa)
uvrCExcinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (599 aa)
Sdel_0588PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: nis:NIS_1346 two-component sensor histidine kinase/response regulator. (1068 aa)
Sdel_0579KEGG: tdn:Suden_1270 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (315 aa)
mntPProtein of unknown function DUF204; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family. (179 aa)
Sdel_0535FdhC protein; KEGG: ccv:CCV52592_1753 FdhC protein. (336 aa)
Sdel_0534PFAM: zinc finger DksA/TraR C4-type; KEGG: cco:CCC13826_0939 TraR/DksA family transcriptional regulator. (119 aa)
Sdel_0522PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: cjd:JJD26997_0121 hypothetical protein. (306 aa)
atpGATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (294 aa)
atpFH+transporting two-sector ATPase B/B' subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (171 aa)
Sdel_0510PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: ccv:CCV52592_1733 F0F1 ATP synthase subunit B'; Belongs to the ATPase B chain family. (140 aa)
Sdel_0509parB-like partition protein; KEGG: ccv:CCV52592_1732 stage 0 sporulation protein J; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the ParB family. (284 aa)
Sdel_0499KEGG: cco:CCC13826_0054 hypothetical protein. (162 aa)
Sdel_0496TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: wsu:WS0502 translation initiation inhibitor. (124 aa)
mutS2Smr protein/MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (733 aa)
Sdel_0488Exonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (64 aa)
gatAglutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (452 aa)
Sdel_0481KEGG: cff:CFF8240_0406 hypothetical protein. (148 aa)
Sdel_0462PFAM: band 7 protein; SMART: band 7 protein; KEGG: azo:azo2269 band 7 family protein. (304 aa)
Sdel_0460PFAM: filamentation induced by cAMP protein Fic; KEGG: pmu:PM1770 hypothetical protein. (388 aa)
Sdel_0452Hypothetical protein. (238 aa)
Sdel_0447TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: abu:Abu_0359 C4-dicarboxylate-binding periplasmic protein. (329 aa)
prfBPeptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. (364 aa)
Sdel_0432KEGG: ccv:CCV52592_0256 hypothetical protein. (172 aa)
Sdel_0423PFAM: triosephosphate isomerase; KEGG: abu:Abu_2134 triosephosphate isomerase. (237 aa)
Sdel_0397PFAM: Dynamin family protein; KEGG: abu:Abu_0298 ATP/GTP-binding protein. (789 aa)
Sdel_0395KEGG: ccv:CCV52592_2205 fumarate reductase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein. (661 aa)
Sdel_0386KEGG: stt:t3414 hypothetical protein. (302 aa)
Sdel_0367PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: wsu:WS1672 MCP domain-containing signal transducer. (483 aa)
Sdel_0365PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: wsu:WS1436 putative two-component sensor. (553 aa)
Sdel_0363PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: wsu:WS1434 putative two-component regulator. (228 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1385 aa)
Sdel_0343KEGG: ccv:CCV52592_0167 hypothetical protein. (66 aa)
Sdel_0334KEGG: bch:Bcen2424_0454 phage protein. (524 aa)
gyrADNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (846 aa)
Sdel_0310PFAM: isochorismatase hydrolase; KEGG: abu:Abu_0281 isochorismatase hydrolase. (180 aa)
Sdel_0297TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: ccv:CCV52592_1439 flagellar motor switch protein FliM. (353 aa)
Sdel_0295KEGG: cco:CCC13826_1022 hypothetical protein. (122 aa)
Sdel_0293KEGG: cco:CCC13826_0367 flagellar biosynthesis regulator FlhF; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase. (423 aa)
Sdel_0288TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: ccv:CCV52592_0361 signal peptide peptidase SppA, 36K type. (286 aa)
flhBFlagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (353 aa)
Sdel_0235PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cff:CFF8240_0242 two-component regulator. (223 aa)
Sdel_0234PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cco:CCC13826_0979 prolipoprotein diacylglyceryl transferase. (436 aa)
Sdel_0220PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: cff:CFF8240_0265 flagellar assembly protein H. (263 aa)
Sdel_0219TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: cla:Cla_1357 flagellar motor switch protein FliG. (341 aa)
Sdel_0218Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (574 aa)
Sdel_0216TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; Chorismate mutase; KEGG: cff:CFF8240_0269 chorismate mutase/prephenate dehydratase. (355 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (401 aa)
Sdel_0205PFAM: CheW domain protein; response regulator receiver; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; response regulator receiver; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: cff:CFF8240_0331 chemotaxis histidine kinase. (774 aa)
Sdel_0188KEGG: cha:CHAB381_1351 rod shape-determining protein MreC. (248 aa)
Sdel_0179PFAM: band 7 protein; SMART: band 7 protein; KEGG: cco:CCC13826_2108 SPFH domain-containing protein. (363 aa)
Sdel_0156KEGG: cla:Cla_1427 hypothetical protein. (171 aa)
Sdel_0137PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: nis:NIS_0287 AAA family ATPase. (577 aa)
Sdel_0113PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_1331 methyl-accepting chemotaxis sensory transducer. (563 aa)
Sdel_0112PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ccv:CCV52592_1331 methyl-accepting chemotaxis sensory transducer. (563 aa)
Sdel_0107PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: wsu:WS1034 putative two-component sensor. (540 aa)
Sdel_0100PFAM: Mammalian cell entry related domain protein; KEGG: cje:Cj1648 putative ABC transport system periplasmic substrate-binding protein. (316 aa)
Sdel_0098KEGG: abu:Abu_1107 hypothetical protein. (72 aa)
Sdel_0088KEGG: cco:CCC13826_1645 putative phage integrase. (238 aa)
Sdel_0067KEGG: abu:Abu_1388 hypothetical protein. (568 aa)
Sdel_0066PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cco:CCC13826_1825 recombination factor protein RarA. (396 aa)
rnjBeta-lactamase domain protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (664 aa)
Sdel_0052TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; KEGG: tdn:Suden_1239 anaerobic ribonucleoside triphosphate reductase. (701 aa)
Sdel_0042PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: nis:NIS_0072 MarC family multiple antibiotic resistance protein. (212 aa)
Sdel_0031KEGG: eba:ebA5899 hypothetical protein. (240 aa)
Sdel_0016PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: wsu:WS0128 putative MCP-type signal transduction protein. (357 aa)
Sdel_0013PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: wsu:WS1533 transcriptional regulator. (218 aa)
Sdel_0008KEGG: abu:Abu_0634 hypothetical protein. (403 aa)
dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (441 aa)
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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