STRINGSTRING
Sdel_1216 Sdel_1216 Sdel_0012 Sdel_0012 Sdel_0020 Sdel_0020 Sdel_0021 Sdel_0021 Sdel_0022 Sdel_0022 Sdel_0100 Sdel_0100 Sdel_0111 Sdel_0111 Sdel_0171 Sdel_0171 Sdel_0172 Sdel_0172 Sdel_0181 Sdel_0181 Sdel_0223 Sdel_0223 ndk ndk Sdel_0251 Sdel_0251 Sdel_0276 Sdel_0276 Sdel_0335 Sdel_0335 tuf tuf secE secE rpoB rpoB rpoC rpoC Sdel_0364 Sdel_0364 Sdel_0378 Sdel_0378 Sdel_0388 Sdel_0388 Sdel_0425 Sdel_0425 rpoZ rpoZ Sdel_0885 Sdel_0885 Sdel_1055 Sdel_1055 Sdel_1138 Sdel_1138 Sdel_1160 Sdel_1160 msrA msrA Sdel_1229 Sdel_1229 Sdel_1311 Sdel_1311 Sdel_1342 Sdel_1342 secA secA Sdel_1570 Sdel_1570 Sdel_1571 Sdel_1571 Sdel_1572 Sdel_1572 Sdel_1573 Sdel_1573 secF secF secD secD Sdel_1628 Sdel_1628 Sdel_1683 Sdel_1683 Sdel_1767 Sdel_1767 Sdel_1794 Sdel_1794 tpx tpx Sdel_1859 Sdel_1859 Sdel_1897 Sdel_1897 Sdel_1902 Sdel_1902 rpoA rpoA secY secY Sdel_2033 Sdel_2033 Sdel_2034 Sdel_2034 Sdel_2035 Sdel_2035 Sdel_2146 Sdel_2146 Sdel_2184 Sdel_2184 Sdel_2257 Sdel_2257 Sdel_2278 Sdel_2278
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sdel_1216KEGG: cff:CFF8240_0516 hypothetical protein. (387 aa)
Sdel_0012TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: csa:Csal_1475 Bcr/CflA subfamily drug resistance transporter. (395 aa)
Sdel_0020TIGRFAM: nickel ABC transporter, periplasmic nickel- binding protein; PFAM: extracellular solute-binding protein family 5; KEGG: wsu:WS0984 putative NikA protein. (539 aa)
Sdel_0021TIGRFAM: nickel ABC transporter, permease subunit NikB; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0985 nickel transport system permease. (311 aa)
Sdel_0022TIGRFAM: nickel ABC transporter, permease subunit NikC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0986 oligopeptide ABC transporter permease. (273 aa)
Sdel_0100PFAM: Mammalian cell entry related domain protein; KEGG: cje:Cj1648 putative ABC transport system periplasmic substrate-binding protein. (316 aa)
Sdel_0111PFAM: major facilitator superfamily MFS_1; KEGG: ccv:CCV52592_1627 major facilitator transporter. (396 aa)
Sdel_0171TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: wsu:WS0452 thioredoxin; Belongs to the thioredoxin family. (105 aa)
Sdel_0172KEGG: cju:C8J_0143 thioredoxin-disulfide reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (310 aa)
Sdel_0181Peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sun:SUN_0313 peroxiredoxin family protein. (154 aa)
Sdel_0223PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; Redoxin domain protein; KEGG: wsu:WS1995 alkyl hydroperoxide reductase subunit C. (198 aa)
ndkNucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. (137 aa)
Sdel_0251TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: nis:NIS_0424 riboflavin biosynthesis protein RibG. (338 aa)
Sdel_0276KEGG: scl:sce8829 hypothetical protein. (103 aa)
Sdel_0335TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tdn:Suden_2099 thioredoxin; Belongs to the thioredoxin family. (140 aa)
tufTranslation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (399 aa)
secEPreprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. (59 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1385 aa)
rpoCDNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1507 aa)
Sdel_0364PFAM: extracellular solute-binding protein family 5; KEGG: wsu:WS1435 putative periplasmic binding protein. (529 aa)
Sdel_0378Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (198 aa)
Sdel_0388PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA4309 sugar efflux transporter. (390 aa)
Sdel_0425PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: abu:Abu_0216 oligopeptide ABC transporter, permease protein. (322 aa)
rpoZDNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (71 aa)
Sdel_0885PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sun:SUN_1437 multidrug ABC transporter, ATP- binding protein. (590 aa)
Sdel_1055PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cff:CFF8240_0787 lipid export ABC transport protein. (571 aa)
Sdel_1138PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nis:NIS_0996 oligopeptide ABC transporter, permease. (270 aa)
Sdel_1160PFAM: major facilitator superfamily MFS_1; KEGG: mmw:Mmwyl1_1945 major facilitator transporter. (403 aa)
msrAPeptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (175 aa)
Sdel_1229Ferritin Dps family protein; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (172 aa)
Sdel_1311PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sun:SUN_0563 thioredoxin reductase. (319 aa)
Sdel_1342PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pca:Pcar_1889 hypothetical protein. (187 aa)
secAPreprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (859 aa)
Sdel_1570PFAM: major facilitator superfamily MFS_1; KEGG: abu:Abu_0336 major facilitator superfamily transporter. (394 aa)
Sdel_1571PFAM: major facilitator superfamily MFS_1; KEGG: abu:Abu_0337 major facilitator superfamily transporter. (412 aa)
Sdel_1572PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS1265 ABC transporter ATP- binding/permease protein. (591 aa)
Sdel_1573PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: wsu:WS1264 ABC transporter ATP-binding protein. (590 aa)
secFProtein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (323 aa)
secDProtein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (522 aa)
Sdel_1628KEGG: cff:CFF8240_0711 thioredoxin domain- containing protein. (201 aa)
Sdel_1683PFAM: major facilitator superfamily MFS_1; KEGG: cff:CFF8240_0581 putative transport protein. (380 aa)
Sdel_1767PFAM: Oligosaccharyl transferase STT3 subunit; KEGG: tdn:Suden_1474 oligosaccharyl transferase, STT3 subunit. (715 aa)
Sdel_1794KEGG: mmw:Mmwyl1_0798 AsnC family transcriptional regulator. (111 aa)
tpxRedoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. (179 aa)
Sdel_1859KEGG: wsu:WS0948 periplasmic phosphate binding protein. (346 aa)
Sdel_1897Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (232 aa)
Sdel_1902PFAM: extracellular solute-binding protein family 5; KEGG: nis:NIS_1607 oligopeptide ABC transporter, substrate-binding protein. (501 aa)
rpoADNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (337 aa)
secYPreprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (420 aa)
Sdel_2033TIGRFAM: nickel ABC transporter, periplasmic nickel- binding protein; PFAM: extracellular solute-binding protein family 5; KEGG: wsu:WS0982 putative NikA protein. (530 aa)
Sdel_2034PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0981 oligopeptide ABC transporter permease. (309 aa)
Sdel_2035PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmr:PMI2945 ABC transporter, permease protein. (277 aa)
Sdel_2146PFAM: major facilitator superfamily MFS_1; KEGG: abu:Abu_0585 major facilitator superfamily transporter. (438 aa)
Sdel_2184PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: abu:Abu_1935 arsenate reductase. (133 aa)
Sdel_2257Peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; Redoxin domain protein; KEGG: sun:SUN_1284 AhpC/TSA family peroxiredoxin. (235 aa)
Sdel_2278Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (112 aa)
Your Current Organism:
Sulfurospirillum deleyianum
NCBI taxonomy Id: 525898
Other names: S. deleyianum DSM 6946, Sulfurospirillum deleyianum DSM 6946, Sulfurospirillum deleyianum str. DSM 6946, Sulfurospirillum deleyianum strain DSM 6946
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